R, including Bioconductor
We recommend that you use version of R available in Anaconda. To set this up, run the commands:
[login.cx1}$ module load anaconda3/personal
[login.cx1}$ anaconda- setup
[login.cx1}$ conda install r
You'll only need to run 'anaconda-setup' once, but 'module load anaconda3/personal' will be needed every time you want to use R.
Most CRAN packages are available for installation, with package names prefixed "r-" or "bioconductor-", eg "r-png" or "bioconductor-teq"
You can find search for and install additional packages with the "conda" command. For example:
[login.cx1}$ module load anaconda3/personal
[login.cx1}$ conda search bioconductor-•
[login.cx1}$ conda install bioconductor-teqc
If you cannot find a package you need try a conventional "install.packages()". If you meet with any installation problems raise a support request with us.