Skip to main content Skip to search Skip to section menu View accessibility support page

Imperial College London

Latest News

An Imperial chemical engineer will lead a new national centre of excellence in technology development and innovation.

Imperial academic to lead UK's new national science hub

Options for a greener gas grid are explored by researchers from Imperial College London in a white paper out today.

Can the UK's gas grid go green? New white paper explores options

In this edition: A medical researcher who scaled new heights, investigating the possible positives of psychedelics, and a summer science exhibition.

Podcast: Everest, drugs, and science on show

More News

Main Navigation

Search

  • Study
    Close
    • Study overview
    • Undergraduate
      Top Links
      • Courses for 2018 entry
      • How to apply
      • Fees and funding
      • Accommodation
      • Open days
      • Request a prospectus
    • Postgraduate
      Top Links
      • Courses for 2017–18
      • How to apply
      • Fees and funding
      • Accommodation
      • Open days
      • Request a prospectus
    • Faculties and departments
    • Continuing Professional Development
    • Executive Education
    • Centre for Languages Culture and Communication
    • St Paul's Cathedral Living in LondonLondon’s fusion of culture, charm and career opportunities is hard to beat
    • International studentsInternational studentsStudents come from over 125 different countries to study at Imperial
    • Queen's LawnCampus lifeExperience what it's like to be a member of the College community
  • Research & Innovation
    Close
    • Research and Innovation
    • Partner with us
      At a glance
      • Clinical Trials
      • Collaborations
      • Commercialisation
      • Consultancy
      • Executive education
      • A-Z services for partners
    • Research support
      At a glance
      • Resources for staff
      • Research Office
      • Faculty research services teams
      • Research integrity
      • Clinical Trials
      • Global Imperial
    • College Strategy 2015-2020
    • Faculties and departments
    • A-Z research groups and centres
    • Funding opportunities
    • REF 2014
    • Brain scansImperial’s impactRead case studies about how Imperial research has made a difference
    • Flying robotResearch newsKeep up to date with Imperial’s cutting edge discoveries
    • In the labEnterprising studentsFind out how our students develop their entrepreneurial & innovative ideas
  • Be Inspired
    Close
    • Be Inspired
    • Take part
      Top links
      • Schools activities
      • Public events
      • Festival
      • Alumni events
    • Engage online
      Top links
      • Lectures online
      • Podcasts
      • iTunes U
    • Social media directory
    • Staff and student volunteering
    • Imperial magazine
    • PodcastsImperial College Podcastpresented by Gareth Mitchell and the Communications & Public Affairs pod squad
    • Imperial FestivalImperial FestivalMake a date with discovery at our annual celebration of science, engineering and creativity, 6-7 May
    • Blog pageStudent blogsFind out about life on campus from our team of student bloggers
  • About
    Close
    • About
    • The College
      Overview
      • Strategy 2015-2020
      • League tables
      • Facts and figures
      • College governance
      • Administration and support services
      • Imperial timeline
    • Our people
      At a glance
      • President
      • Provost
      • Eminent alumni
      • Award winners
    • A - Z of Faculties and Departments
    • Faculty of Engineering
    • Faculty of Medicine
    • Faculty of Natural Sciences
    • Imperial College Business School
    • LionGlobal ImperialWe are the UK's most international university
    • Our campusesOur campusesExplore our London locations
    • White City CampusWhite City CampusImperial’s research and innovation district
  • Visit
  • What's on
  • News
  • Give
  • A-Z
    • Close
    • Faculties and departments
    • Research centres and groups
    • People finder
    • Administration and support services
  • Information for
    • Close
    • Prospective students
    • Current students
    • Alumni
    • Staff
    • Job applicants
    • Partners and business
    • Media
    • Donors
    • Parents
    • Conference organisers

Bioinformatics Data Science Group

Section Navigation

  • Close
  • Bioinformatics Data Science Group Overview
  • About
    • Chargeable services
    • Charging structure
    • Writing a new grant proposal
    • Data sharing and data management plans for grants
  • Resources
    • Hardware
    • Software
    • Login service
    • Databases
    • UK Med-Bio
  • Projects
    • Genomics and Next Generation Sequencing (NGS)
    • Clinical and biological databases
    • Data management
    • Systems biology
    • Analysis and others
    • UK Med-Bio
  • Publications
  • People
  • Support
    • Help
    • Training
    • Apply for account
    • Service status
  • Contact us
  • Home
  • Faculty of Medicine
  • Research and impact
  • Facilities and services
  • Bioinformatics Data Science Group
  • Support
  • Help

Help

colour block apply, costing

Interested in bioinformatics analysis?

Apply for a BDSG account online

Writing a grant?

Costing bioinformatics support for grant applications

colour block connect,contact

Already have an account?

Connecting to and using our services (college login required)

Need further help?

Contact the BSDG

Using Bioinformatics Services 

Our main support resources are maintained on our Wiki. A college login is required to view these pages.

Login service

  • Connecting to codon
  • Storage and quotas
  • File transfer to codon
  • Accessing software on codon
  • Changing passwords/connection errors
  • Memory limits
  • Managing long running jobs

Cluster usage

  • The BSS cluster
  • Introduction to cluster usage
  • Getting started
  • Submitting simple jobs
  • Advanced submission options
  • Managing submitted jobs
  • Monitoring resource usage
  • Submitting array jobs
  • Submitting parallel jobs
  • Submitting MPI jobs
  • Data staging

Bioinformatics file formats

  • Fasta format
  • Fastq format
  • EMBL/Genbank format
  • SwissProt formta
  • PDB format
  • GFF/GTF format
  • BED format

lower links

Common tasks

Retrieving sequences from databases


Sequence manipulation and format conversion


Running BLAST searches


Find patterns in DNA


Plot restriction sites


Make pairwise sequence alignments

NGS Sequence Analysis

Understanding sequence quality

Support

  • Help
  • Training
  • Apply for account
    • Conditions of use
  • Service status
Print Email Share

Contact & Links

Section Information

Faculty of Medicine

Imperial College London

Level 2, Faculty Building
South Kensington Campus
London SW7 2AZ, UK
Contact us

Map

Departments

  • Department of Medicine
  • Department of Surgery and Cancer
  • Institute of Clinical Sciences
  • National Heart and Lung Institute
  • School of Public Health

Excellent staff and innovative teaching methods deliver truly world-class student experiences.

Our expertise in translating biomedical discoveries into clinical practice benefits patients worldwide.

Follow

TwitterYou TubeGoogle Plus

Useful Links

Information for

  • Prospective students
  • Alumni
  • Job applicants
  • Partners and business
  • Media
  • Donors
  • Parents
  • Conference organisers

Top links

  • Imperial and the EU
  • Outlook 365 web access
  • Contact the ICT Service Desk
  • Library
  • Blackboard
  • Sport
  • Term dates

Students

  • Current students
  • Imperial College Union
  • Student Hub
  • Careers Service
  • Imperial Mobile
  • Graduation

Staff

  • Staff main page
  • ICIS
  • HR procedures
  • Salaries, Terms and Conditions
  • Research support
  • Information for new staff

Imperial partners

  • Imperial College Healthcare NHS Trust
  • Imperial College Academic Health Science Centre
  • Imperial College Health Partners
  • Imperial Consultants
  • Imperial Innovations

A-Z

  • Faculties, departments and institutes
  • Research centres and groups
  • Administration and support services
  • People finder

College Information

Imperial College London

Address

South Kensington Campus
London SW7 2AZ, UK
tel: +44 (0)20 7589 5111
Campuses & maps

Follow Imperial

Facebook Twitter You Tube Linked in Google Plus Instagram Weibo

Site Information

  • Sitemap
  • Accessibility
  • About this site
  • Use of cookies
  • Report incorrect content
  • © 2017 Imperial College London
  • Log in