Imperial College London

DrAnneCori

Faculty of MedicineSchool of Public Health

Lecturer
 
 
 
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Contact

 

+44 (0)20 7594 3229a.cori

 
 
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Location

 

G27Norfolk PlaceSt Mary's Campus

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Summary

 

Publications

Publication Type
Year
to

52 results found

Bhatia S, Carrion M, Cohn E, Cori A, Nouvellet P, Lassmann B, Madoff L, Brownstein Jet al., 2019, Big brother is watching - using digital disease surveillance tools for near real-time forecasting, Publisher: ELSEVIER SCI LTD, Pages: 27-27, ISSN: 1201-9712

CONFERENCE PAPER

Mulubwa C, Hensen B, Phiri MM, Shanaube K, Schaap AJ, Floyd S, Phiri CR, Bwalya C, Bond V, Simwinga M, Mwenge L, Fidler S, Hayes R, Mwinga A, Ayles H, Beyer N, Bock P, El-Sadr W, Cohen M, Eshleman S, Agyei Y, Piwowar-Manning E, Hoddinott G, Donnell D, Wilson E, Emel L, Noble H, Macleod D, Burns D, Fraser C, Cori A, Sista N, Griffith S, Moore A, Headen T, White R, Miller E, Hargreaves J, Hauck K, Thomas R, Limbada M, Bwalya J, Mwinga A, Pickles M, Sabapathy K, Dunbar R, Yang B, Smith PC, Vermund S, Mandla N, Makola N, van Deventer A, James A, Jennings K, Kruger J, Phiri M, Kosloff B, Kanema S, Sauter R, Probert W, Kumar R, Sakala E, Silumesi A, Skalland T, Yuhas Ket al., 2019, Community based distribution of oral HIV self-testing kits in Zambia: a cluster-randomised trial nested in four HPTN 071 (PopART) intervention communities, LANCET HIV, Vol: 6, Pages: E81-E92, ISSN: 2352-3018

JOURNAL ARTICLE

Cori A, Nouvellet P, Garske T, Bourhy H, Nakoune E, Jombart Tet al., 2018, A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies, PLOS COMPUTATIONAL BIOLOGY, Vol: 14, ISSN: 1553-7358

JOURNAL ARTICLE

Campbell F, Didelot X, Fitzjohn R, Ferguson N, Cori A, Jombart Tet al., 2018, outbreaker2: a modular platform for outbreak reconstruction, BMC BIOINFORMATICS, Vol: 19, ISSN: 1471-2105

JOURNAL ARTICLE

Ahuka-Mundeke S, Ahmed YA, Allarangar Y, Anoko J, Archer BN, Abedi AA, Bagaria J, Barry A, Bathe NT, Belizaire MRD, Bhatia S, Bokenge T, Bruni E, Cori A, Dabire E, Diallo AM, Diallo B, Donnelly CA, Dorigatti I, Dorji TC, Waeber AREC, Fall IS, Ferguson NM, FitzJohn RG, Tengomo GLF, Formenty PBH, Forna A, Fortin A, Garske T, Gaythorpe KAM, Gurry C, Hamblion E, Djingarey MH, Haskew C, Hugonnet SAL, Imai N, Impouma B, Kabongo G, Kabamba GK, Kalenga OI, Kibangou E, Kitenge E, Lay Y, Lee TM-H, Lubula L, Lukoya CO, Mwati JDDL, Ly O, Makiala-Mandanda S, Mamba A, Mbala-Kingebeni P, Mboussou FFR, Mbuy G, Mlanda T, Makuma VM, Mavila O, Morgan O, Mulumba AM, Mukadi-Bamuleka D, Kakoni PM, Mutombo A, Muyembe J-J, Ngamala PN, Ngom R, Ngoy G, Nouvellet P, Nsio J, Ousman KB, Peron E, Polonsky JA, Ryan MJ, Salama P, Toure A, Towner R, Tshapenda G, Van de Weerdt R, Van Kerkhove M, Wendland A, Yao NKM, Yoti Z, Yuma Eet al., 2018, Outbreak of Ebola virus disease in the Democratic Republic of the Congo, April-May, 2018: an epidemiological study, LANCET, Vol: 392, Pages: 213-221, ISSN: 0140-6736

JOURNAL ARTICLE

Nouvellet P, Cori A, Garske T, Blake IM, Dorigatti I, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Van Kerkhove MD, Fraser C, Donnelly CA, Ferguson NM, Riley Set al., 2018, A simple approach to measure transmissibility and forecast incidence, EPIDEMICS, Vol: 22, Pages: 29-35, ISSN: 1755-4365

JOURNAL ARTICLE

Campbell F, Strang C, Ferguson N, Cori A, Jombart Tet al., 2018, When are pathogen genome sequences informative of transmission events?, PLOS PATHOGENS, Vol: 14, ISSN: 1553-7366

JOURNAL ARTICLE

Thomas R, Burger R, Harper A, Kanema S, Mwenge L, Vanqa N, Bell-Mandla N, Smith PC, Floyd S, Bock P, Ayles H, Beyers N, Donnell D, Fidler S, Hayes R, Hauck Ket al., 2017, Differences in health-related quality of life between HIV-positive and HIV-negative people in Zambia and South Africa: a cross-sectional baseline survey of the HPTN 071 (PopART) trial, LANCET GLOBAL HEALTH, Vol: 5, Pages: E1133-E1141, ISSN: 2214-109X

JOURNAL ARTICLE

Dorigatti I, Hamlet A, Aguas R, Cattarino L, Cori A, Donnelly CA, Garske T, Imai N, Ferguson NMet al., 2017, International risk of yellow fever spread from the ongoing outbreak in Brazil, December 2016 to May 2017, EUROSURVEILLANCE, Vol: 22, Pages: 10-13, ISSN: 1560-7917

JOURNAL ARTICLE

Dorigatti I, Hamlet A, Aguas R, Cattarino L, Cori A, Donnelly C, Garske T, Imai N, Ferguson Net al., 2017, International risk of yellow fever spread from the ongoing outbreak in Brazil, Publisher: bioRxiv

The largest Yellow Fever (YF) outbreak in a decade in Latin America is underway in the Southeast of Brazil. In this article we provide a quantitative assessment of the risk of travel-related international spread of YF. We argue that mitigating the risk of imported YF cases seeding local transmission requires heightened surveillance in the southern United States, Latin America (especially Argentina, Chile and Uruguay) and Europe (especially Portugal, Spain, Italy and Germany).

WORKING PAPER

Garske T, Cori A, Ariyarajah A, Blake IM, Dorigatti I, Eckmanns T, Fraser C, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Van Kerkhove MD, Dye C, Ferguson NM, Donnelly CAet al., 2017, Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013-2016, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 372, ISSN: 0962-8436

JOURNAL ARTICLE

Cori A, Donnelly CA, Dorigatti I, Ferguson NM, Fraser C, Garske T, Jombart T, Nedjati-Gilani G, Nouvellet P, Riley S, Van Kerkhove MD, Mills HL, Blake IMet al., 2017, Key data for outbreak evaluation: building on the Ebola experience, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 372, ISSN: 0962-8436

JOURNAL ARTICLE

Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain ASMM, Joy JB, Kendall M, Kuhnert D, Leventhal GE, Liang R, Plazzotta G, Poon AFY, Rasmussen DA, Stadler T, Volz E, Weis C, Brown AJL, Fraser Cet al., 2017, Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison, MOLECULAR BIOLOGY AND EVOLUTION, Vol: 34, Pages: 185-203, ISSN: 0737-4038

JOURNAL ARTICLE

Agua-Agum J, Ariyarajah A, Aylward B, Bawo L, Bilivogui P, Blake IM, Brennan RJ, Cawthorne A, Cleary E, Clement P, Conteh R, Cori A, Dafae F, Dahl B, Dangou J-M, Diallo B, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Fallah M, Ferguson NM, Fiebig L, Fraser C, Garske T, Gonzalez L, Hamblion E, Hamid N, Hersey S, Hinsley W, Jambei A, Jombart T, Kargbo D, Keita S, Kinzer M, George FK, Godefroy B, Gutierrez G, Kannangarage N, Mills HL, Moller T, Meijers S, Mohamed Y, Morgan O, Nedjati-Gilani G, Newton E, Nouvellet P, Nyenswah T, Perea W, Perkins D, Riley S, Rodier G, Rondy M, Sagrado M, Savulescu C, Schafer IJ, Schumacher D, Seyler T, Shah A, Van Kerkhove MD, Wesseh CS, Yoti Zet al., 2016, Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study, PLOS MEDICINE, Vol: 13, ISSN: 1549-1676

JOURNAL ARTICLE

Borquez A, Cori A, Pufall EL, Kasule J, Slaymaker E, Price A, Elmes J, Zaba B, Crampin AC, Kagaayi J, Lutalo T, Urassa M, Gregson S, Hallett TBet al., 2016, The Incidence Patterns Model to Estimate the Distribution of New HIV Infections in Sub-Saharan Africa: Development and Validation of a Mathematical Model, PLOS MEDICINE, Vol: 13, ISSN: 1549-1676

JOURNAL ARTICLE

Agua-Agum J, Allegranzi B, Ariyarajah A, Aylward RB, Blake IM, Barboza P, Bausch D, Brennan RJ, Clement P, Coffey P, Cori A, Donnelly CA, Dorigatti I, Drury P, Durski K, Dye C, Eckmanns T, Ferguson NM, Fraser C, Garcia E, Garske T, Gasasira A, Gurry C, Gutierrez GJ, Hamblion E, Hinsley W, Holden R, Holmes D, Hugonnet S, Jombart T, Kelley E, Santhana R, Mahmoud N, Mills HL, Mohamed Y, Musa E, Naidoo D, Nedjati-Gilani G, Newton E, Norton I, Nouvellet P, Perkins D, Perkins M, Riley S, Schumacher D, Shah A, Minh T, Varsaneux O, Van Kerkhove MDet al., 2016, After Ebola in West Africa - Unpredictable Risks, Preventable Epidemics, NEW ENGLAND JOURNAL OF MEDICINE, Vol: 375, Pages: 587-596, ISSN: 0028-4793

JOURNAL ARTICLE

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DAT, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NMet al., 2016, Unraveling the drivers of MERS-CoV transmission, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 113, Pages: 9081-9086, ISSN: 0027-8424

JOURNAL ARTICLE

Heffernan A, Barber E, Thomas R, Fraser C, Pickles M, Cori Aet al., 2016, Impact and Cost-Effectiveness of Point-Of-Care CD4 Testing on the HIV Epidemic in South Africa, PLOS ONE, Vol: 11, ISSN: 1932-6203

JOURNAL ARTICLE

Herbeck JT, Mittler JE, Gottlieb GS, Goodreau SM, Murphy JT, Cori A, Pickles M, Fraser Cet al., 2016, Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study, VIRUS EVOLUTION, Vol: 2, ISSN: 2057-1577

JOURNAL ARTICLE

Vegvari C, Hadjichrysanthou C, Cauet E, Lawrence E, Cori A, de Wolf F, Anderson RMet al., 2016, How Can Viral Dynamics Models Inform Endpoint Measures in Clinical Trials of Therapies for Acute Viral Infections?, PLOS ONE, Vol: 11, ISSN: 1932-6203

JOURNAL ARTICLE

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DATet al., 2016, Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia, AMERICAN JOURNAL OF EPIDEMIOLOGY, Vol: 183, Pages: 657-663, ISSN: 0002-9262

JOURNAL ARTICLE

Cori A, 2016, Of germs and men., Nat Microbiol, Vol: 1

JOURNAL ARTICLE

Herbeck J, Mittler J, Gottlieb G, Goodreau S, Murphy J, Cori A, Pickles M, Fraser Cet al., 2016, Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

There are global increases in the use of HIV antiretroviral therapy (ART), guided by clinical benefits of early ART initiation, and the efficacy of treatment as prevention of transmission. UNAIDS has set forth an ambitious 90-90-90 strategy for 2020. Separately, it has been shown theoretically and empirically that HIV virulence can evolve over time. Observed virulence levels may reflect an adaptive balance between infected lifespan and per-contact transmission rate. Critically, the potential effects of widespread ART usage on HIV virulence are unknown. To predict these effects, we used an agent-based stochastic model to simulate changes in HIV virulence, using set point viral load as a virulence proxy. We calibrated our epidemic model to the prevalence and incidence trends of South Africa. We also repeated our analysis using a separate model calibration, as a sensitivity analysis, and found that predicted impact of ART on virulence was relatively insensitive to calibration. We explored two distinct ART scenarios, at increasing coverage levels: ART initiation based on patients reaching a CD4+ T cell count threshold, or based on time elapsed since infection (a scenario that mimics the "universal testing and treatment" aspirations in the 90-90-90 UNAIDS targets). We found that HIV virulence is generally unchanged in scenarios of CD4-based initiation. However, with ART initiation based on time since infection (universal test and treat), virulence can increase moderately within several years of ART rollout, under high coverage levels and early treatment initiation albeit within the context of epidemics that are rapidly decreasing in size. We also show that, compared to non-evolutionary HIV epidemic models, allowing for evolving virulence predicts greater declines in HIV incidence after ART rollout. Our modeling study suggests that increasing virulence driven by universal test and treat is likely not a major public health concern, but could be monitored in senti

JOURNAL ARTICLE

Agua-Agum J, Ariyarajah A, Blake IM, Cori A, Donnelly CA, Dorigatti I, Dye C, Eck-Manns T, Ferguson NM, Fraser C, Garske T, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Thomas LJ, Van Kerkhove MDet al., 2016, Ebola Virus Disease among Male and Female Persons in West Africa, NEW ENGLAND JOURNAL OF MEDICINE, Vol: 374, Pages: 96-98, ISSN: 0028-4793

JOURNAL ARTICLE

Nouvellet P, Garske T, Mills HL, Nedjati-Gilani G, Hinsley W, Blake IM, Van Kerkhove MD, Cori A, Dorigatti I, Jombart T, Riley S, Fraser C, Donnelly CA, Ferguson NMet al., 2015, The role of rapid diagnostics in managing Ebola epidemics, NATURE, Vol: 528, Pages: S109-S116, ISSN: 0028-0836

JOURNAL ARTICLE

O'Reilly KM, Cori A, Durry E, Wadood MZ, Bosan A, Aylward RB, Grassly NCet al., 2015, A New Method for Estimating the Coverage of Mass Vaccination Campaigns Against Poliomyelitis From Surveillance Data, AMERICAN JOURNAL OF EPIDEMIOLOGY, Vol: 182, Pages: 961-970, ISSN: 0002-9262

JOURNAL ARTICLE

Cori A, Pickles M, van Sighem A, Gras L, Bezemer D, Reiss P, Fraser Cet al., 2015, CD4(+) cell dynamics in untreated HIV-1 infection: overall rates, and effects of age, viral load, sex and calendar time, AIDS, Vol: 29, Pages: 2435-2446, ISSN: 0269-9370

JOURNAL ARTICLE

Bezemer D, Cori A, Ratmann O, van Sighem A, Hermanides HS, Dutilh BE, Gras L, Faria NR, van den Hengel R, Duits AJ, Reiss P, de Wolf F, Fraser Cet al., 2015, Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis, PLOS MEDICINE, Vol: 12, ISSN: 1549-1676

JOURNAL ARTICLE

Eaton JW, Bacaer N, Bershteyn A, Cambiano V, Cori A, Dorrington RE, Fraser C, Gopalappa C, Hontelez JAC, Johnson LF, Klein DJ, Phillips AN, Pretorius C, Stover J, Rehle TM, Hallett TBet al., 2015, Assessment of epidemic projections using recent HIV survey data in South Africa: a validation analysis of ten mathematical models of HIV epidemiology in the antiretroviral therapy era, LANCET GLOBAL HEALTH, Vol: 3, Pages: E598-E608, ISSN: 2214-109X

JOURNAL ARTICLE

Borquez A, Cori A, Pufall E, Kasule J, Slaymaker E, Price A, Elmes J, Gregson S, Crampin M, Urassa M, Kagaayi J, Lutalo T, Hallett Tet al., 2015, ESTIMATING THE DISTRIBUTION OF NEW HIV INFECTIONS BY KEY DETERMINANTS IN GENERALISED EPIDEMICS OF SUB-SAHARAN AFRICA USING A VALIDATED MATHEMATICAL MODEL, Publisher: BMJ PUBLISHING GROUP, Pages: A215-A216, ISSN: 1368-4973

CONFERENCE PAPER

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