Imperial College London

ProfessorAlfriedVogler

Faculty of Natural SciencesDepartment of Life Sciences (Silwood Park)

Professor of Molecular Systematics
 
 
 
//

Contact

 

+44 (0)20 7942 5613a.vogler Website

 
 
//

Location

 

GWW 2.2Silwood ParkSilwood Park

//

Summary

 

Publications

Publication Type
Year
to

213 results found

Tang P, Zhu J-C, Zheng B-Y, Wei S-J, Sharkey M, Chen X-X, Vogler APet al., 2019, Mitochondrial phylogenomics of the Hymenoptera, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 131, Pages: 8-18, ISSN: 1055-7903

JOURNAL ARTICLE

Linard B, Crampton-Platt A, Moriniere J, Timmermans MJTN, Andujar C, Arribas P, Miller KE, Lipecki J, Favreau E, Hunter A, Gomez-Rodriguez C, Barton C, Nie R, Gillett CPDT, Breeschoten T, Bocak L, Vogler APet al., 2018, The contribution of mitochondrial metagenomics to large-scale data mining and phylogenetic analysis of Coleoptera, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 128, Pages: 1-11, ISSN: 1055-7903

JOURNAL ARTICLE

Creedy TJ, Ng WS, Vogler A, Towards accurate species-level metabarcoding of arthropod communities from the tropical forest canopy, Ecology and Evolution, ISSN: 2045-7758

Metabarcoding of arthropod communities can be used for assessing species diversity in tropical forests but the methodology requires validation for accurate and repeatable species occurrences in complex mixtures. This study investigates how the composition of ecological samples affects the accuracy of species recovery. Starting with field-collected bulk samples from the tropical canopy, the recovery of specimens was tested for subsets of different body sizes and major taxa, by assembling these subsets into increasingly complex composite pools. After metabarcoding, we track whether richness, diversity and most importantly composition of any size class or taxonomic subset is affected by the presence of other subsets in the mixture.Operational Taxonomic Units (OTUs) greatly exceeded the number of morphospecies in most taxa, even under very stringent sequencing read filtering. There was no significant effect on the recovered OTU richness of small and medium-sized arthropods when metabarcoded alongside larger arthropods, despite substantial biomass differences in the mixture. The recovery of taxonomic subsets was not generally influenced by the presence of other taxa, although with some exceptions likely due to primer mismatches. Considerable compositional variation within size and taxon-based subcommunities were evident resulting in high beta diversity among samples from within a single tree canopy, but this beta diversity was not affected by experimental manipulation.We conclude that OTU recovery in complex arthropod communities, with sufficient sequencing depth and within reasonable size ranges, is not skewed by variable biomass of the constituent species. This could remove the need for time-intensive manual sorting prior to metabarcoding. However, there remains a chance of taxonomic bias, which may be primer-dependent. There will never be a panacea primer; instead, metabarcoding studies should carefully consider whether the aim is broad-scale turnover, in which case t

JOURNAL ARTICLE

Andujar C, Arribas P, Yu DW, Vogler AP, Emerson BCet al., 2018, Why the COI barcode should be the community DNA metabarcode for the metazoa, MOLECULAR ECOLOGY, Vol: 27, Pages: 3968-3975, ISSN: 0962-1083

JOURNAL ARTICLE

Murria C, Doledec S, Papadopoulou A, Vogler AP, Bonada Net al., 2018, Ecological constraints from incumbent clades drive trait evolution across the tree-of-life of freshwater macroinvertebrates, ECOGRAPHY, Vol: 41, Pages: 1049-1063, ISSN: 0906-7590

JOURNAL ARTICLE

Kusy D, Motyka M, Andujar C, Bocek M, Masek M, Sklenarova K, Kokas F, Bocakova M, Vogler AP, Bocak Let al., 2018, Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera, FRONTIERS IN ZOOLOGY, Vol: 15, ISSN: 1742-9994

JOURNAL ARTICLE

Nie R-E, Breeschoten T, Timmermans MJTN, Nadein K, Xue H-J, Bai M, Huang Y, Yang X-K, Vogler APet al., 2018, The phylogeny of Galerucinae (Coleoptera: Chrysomelidae) and the performance of mitochondrial genomes in phylogenetic inference compared to nuclear rRNA genes, CLADISTICS, Vol: 34, Pages: 113-130, ISSN: 0748-3007

JOURNAL ARTICLE

Turner SP, Longhorn SJ, Hamilton CA, Gabriel R, Perez-Miles F, Vogler APet al., 2018, Re-evaluating conservation priorities of New World tarantulas (Araneae: Theraphosidae) in a molecular framework indicates non-monophyly of the genera, Aphonopelma and Brachypelma, SYSTEMATICS AND BIODIVERSITY, Vol: 16, Pages: 89-107, ISSN: 1477-2000

JOURNAL ARTICLE

Andujar C, Arribas P, Gray C, Bruce C, Woodward G, Yu DW, Vogler APet al., 2018, Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill, MOLECULAR ECOLOGY, Vol: 27, Pages: 146-166, ISSN: 0962-1083

JOURNAL ARTICLE

Murria C, Bonada N, Vellend M, Zamora-Munoz C, Alba-Tercedor J, Elisa Sainz-Cantero C, Garrido J, Acosta R, El Alami M, Barquin J, Derka T, Alvarez-Cabria M, Sainz-Bariain M, Filipe AF, Vogler APet al., 2017, Local environment rather than past climate determines community composition of mountain stream macroinvertebrates across Europe, MOLECULAR ECOLOGY, Vol: 26, Pages: 6085-6099, ISSN: 0962-1083

JOURNAL ARTICLE

Andujar C, Perez-Gonzalez S, Arribas P, Zaballos JP, Vogler AP, Ribera Iet al., 2017, Speciation below ground: Tempo and mode of diversification in a radiation of endogean ground beetles, MOLECULAR ECOLOGY, Vol: 26, Pages: 6053-6070, ISSN: 0962-1083

JOURNAL ARTICLE

Choo LQ, Crampton-Platt A, Vogler AP, 2017, Shotgun mitogenomics across body size classes in a local assemblage of tropical Diptera: Phylogeny, species diversity and mitochondrial abundance spectrum, MOLECULAR ECOLOGY, Vol: 26, Pages: 5086-5098, ISSN: 0962-1083

JOURNAL ARTICLE

Lopez-Lopez A, Vogler AP, 2017, The mitogenome phylogeny of Adephaga (Coleoptera), MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 114, Pages: 166-174, ISSN: 1055-7903

JOURNAL ARTICLE

Bush A, Sollmann R, Wilting A, Bohmann K, Cole B, Balzter H, Martius C, Zlinszky A, Calvignac-Spencer S, Cobbold CA, Dawson TP, Emerson BC, Ferrier S, Gilbert MTP, Herold M, Jones L, Leendertz FH, Matthews L, Millington JDA, Olson JR, Ovaskainen O, Raffaelli D, Reeve R, Roedel M-O, Rodgers TW, Snape S, Visseren-Hamakers I, Vogler AP, White PCL, Wooster MJ, Yu DWet al., 2017, Connecting Earth observation to high-throughput biodiversity data, NATURE ECOLOGY & EVOLUTION, Vol: 1, ISSN: 2397-334X

JOURNAL ARTICLE

Andujar C, Arribas P, Vogler AP, 2017, Terra incognita of soil biodiversity: unseen invasions under our feet, MOLECULAR ECOLOGY, Vol: 26, Pages: 3087-3089, ISSN: 0962-1083

JOURNAL ARTICLE

Pu T, Vogler AP, 2017, Evolution: Taking the Sting out of Wasp Phylogenetics, CURRENT BIOLOGY, Vol: 27, Pages: R358-R360, ISSN: 0960-9822

JOURNAL ARTICLE

Timmermans MJTN, Thompson MJ, Collins S, Vogler APet al., 2017, Independent evolution of sexual dimorphism and female-limited mimicry in swallowtail butterflies (Papilio dardanus and Papilio phorcas), MOLECULAR ECOLOGY, Vol: 26, Pages: 1273-1284, ISSN: 0962-1083

JOURNAL ARTICLE

Andujar C, Arribas P, Linard B, Kundrata R, Bocak L, Vogler APet al., 2017, The mitochondrial genome of lberobaenia (Coleoptera: Iberobaeniidae): first rearrangement of protein-coding genes in the beetles, MITOCHONDRIAL DNA PART A, Vol: 28, Pages: 156-158, ISSN: 2470-1394

JOURNAL ARTICLE

Linard B, Arribas P, Andujar C, Crampton-Platt A, Vogler APet al., 2017, The mitogenome of Hydropsyche pellucidula (Hydropsychidae): first gene arrangement in the insect order Trichoptera, MITOCHONDRIAL DNA PART A, Vol: 28, Pages: 71-72, ISSN: 2470-1394

JOURNAL ARTICLE

Gomez-Rodriguez C, Timmermans MJTN, Crampton-Platt A, Vogler APet al., 2017, Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes, METHODS IN ECOLOGY AND EVOLUTION, Vol: 8, Pages: 248-256, ISSN: 2041-210X

JOURNAL ARTICLE

Breeschoten T, Doorenweerd C, Tarasov S, Vogler APet al., 2016, Phylogenetics and biogeography of the dung beetle genus Onthophagus inferred from mitochondrial genomes, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 105, Pages: 86-95, ISSN: 1055-7903

JOURNAL ARTICLE

Linard B, Arribas P, Andujar C, Crampton-Platt A, Vogler APet al., 2016, Lessons from genome skimming of arthropod-preserving ethanol, MOLECULAR ECOLOGY RESOURCES, Vol: 16, Pages: 1365-1377, ISSN: 1755-098X

JOURNAL ARTICLE

Paula DP, Linard B, Crampton-Platt A, Srivathsan A, Timmermans MJTN, Sujii ER, Pires CSS, Souza LM, Andow DA, Vogler APet al., 2016, Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents, PLOS ONE, Vol: 11, ISSN: 1932-6203

JOURNAL ARTICLE

Arribas P, Andujar C, Hopkins K, Shepherd M, Vogler APet al., 2016, Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil, METHODS IN ECOLOGY AND EVOLUTION, Vol: 7, Pages: 1071-1081, ISSN: 2041-210X

JOURNAL ARTICLE

Andujar C, Faille A, Perez-Gonzalez S, Zaballos JP, Vogler AP, Ribera Iet al., 2016, Gondwanian relicts and oceanic dispersal in a cosmopolitan radiation of euedaphic ground beetles, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 99, Pages: 235-246, ISSN: 1055-7903

JOURNAL ARTICLE

Bocak L, Kundrata R, Fernandez CA, Vogler APet al., 2016, The discovery of Iberobaeniidae (Coleoptera: Elateroidea): a new family of beetles from Spain, with immatures detected by environmental DNA sequencing, PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 283, ISSN: 0962-8452

JOURNAL ARTICLE

Bidegaray-Batista L, Sanchez-Gracia A, Santulli G, Maiorano L, Guisan A, Vogler AP, Arnedo MAet al., 2016, Imprints of multiple glacial refugia in the Pyrenees revealed by phylogeography and palaeodistribution modelling of an endemic spider, MOLECULAR ECOLOGY, Vol: 25, Pages: 2046-2064, ISSN: 0962-1083

JOURNAL ARTICLE

Ahrens D, Fujisawa T, Krammer H-J, Eberle J, Fabrizi S, Vogler APet al., 2016, Rarity and Incomplete Sampling in DNA-Based Species Delimitation, SYSTEMATIC BIOLOGY, Vol: 65, Pages: 478-494, ISSN: 1063-5157

JOURNAL ARTICLE

Song F, Li H, Jiang P, Zhou X, Liu J, Sun C, Vogler AP, Cai Wet al., 2016, Capturing the Phylogeny of Holometabola with Mitochondria! Genome Data and Bayesian Site-Heterogeneous Mixture Models, GENOME BIOLOGY AND EVOLUTION, Vol: 8, Pages: 1411-1426, ISSN: 1759-6653

JOURNAL ARTICLE

This data is extracted from the Web of Science and reproduced under a licence from Thomson Reuters. You may not copy or re-distribute this data in whole or in part without the written consent of the Science business of Thomson Reuters.

Request URL: http://wlsprd.imperial.ac.uk:80/respub/WEB-INF/jsp/search-html.jsp Request URI: /respub/WEB-INF/jsp/search-html.jsp Query String: respub-action=search.html&id=00154102&limit=30&person=true