The development of complex organisms critically depends upon regulation of gene activity across dozens, hundreds or millions of cells in time and space. This regulation ensures the fidelity of development of complex structures and the overall function of the organism. Its disruption therefore often leads to disease.
We study gene regulation at the genomewide level using computational genomics and epigenomics. Our major research interests focus on:
- Structure and function of gene promoters
- Function and genomic distribution of gene regulatory elements
- Function of transcription factors
- Regulation of the production of transcription factors i.e. transcriptional regulatory networks (TRNs)
- Association of different modes of regulation with epigenetic marks and their inheritance
Our recent work centres on the functional classification of core promoters, the development of methods to correctly assign regulatory elements to the genes they regulate, and the role of the epigenome in guiding development.
et al., 2020, ------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods., Plos Genet, Vol:16
Lenhard B, Sternberg MJE, 2020, Computational Resources for Molecular Biology: Special Issue 2020, Journal of Molecular Biology, Vol:432, ISSN:0022-2836, Pages:3361-3363
et al., 2020, Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans, Iscience, Vol:23
et al., 2020, RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions, Nature Communications, Vol:11, ISSN:2041-1723
et al., 2020, Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing, Nature Communications, Vol:11, ISSN:2041-1723