Imperial College London

ProfessorBorisLenhard

Faculty of MedicineInstitute of Clinical Sciences

Professor of Computational Biology
 
 
 
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Contact

 

+44 (0)20 3313 8353b.lenhard Website

 
 
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Assistant

 

Mr Alastair Douglas Ivor Williams +44 (0)20 3313 4318

 
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Location

 

230ICTEM buildingHammersmith Campus

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Summary

 

Publications

Citation

BibTex format

@article{Tan:2016:bioinformatics/btw024,
author = {Tan, G and Lenhard, B},
doi = {bioinformatics/btw024},
journal = {Bioinformatics},
pages = {1555--1556},
title = {TFBSTools: an R/bioconductor package for transcription factor binding site analysis.},
url = {http://dx.doi.org/10.1093/bioinformatics/btw024},
volume = {32},
year = {2016}
}

RIS format (EndNote, RefMan)

TY  - JOUR
AB - The ability to efficiently investigate transcription factor binding sites (TFBSs) genome-wide is central to computational studies of gene regulation. TFBSTools is an R/Bioconductor package for the analysis and manipulation of TFBSs and their associated transcription factor profile matrices. TFBStools provides a toolkit for handling TFBS profile matrices, scanning sequences and alignments including whole genomes, and querying the JASPAR database. The functionality of the package can be easily extended to include advanced statistical analysis, data visualization and data integration. AVAILABILITY AND IMPLEMENTATION: The package is implemented in R and available under GPL-2 license from the Bioconductor website (http://bioconductor.org/packages/TFBSTools/). CONTACT: ge.tan09@imperial.ac.uk SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
AU - Tan,G
AU - Lenhard,B
DO - bioinformatics/btw024
EP - 1556
PY - 2016///
SN - 1367-4803
SP - 1555
TI - TFBSTools: an R/bioconductor package for transcription factor binding site analysis.
T2 - Bioinformatics
UR - http://dx.doi.org/10.1093/bioinformatics/btw024
UR - http://www.ncbi.nlm.nih.gov/pubmed/26794315
UR - http://hdl.handle.net/10044/1/33037
VL - 32
ER -