My main research interest resides in the application of novel statistical approaches to answer biologically/epidemiologically-driven questions. My main focus has been on:
1- Computationally efficient models for profiling and integrating data from high-throughput platform
2- Dynamic models for disease progression: development of models to identify features driving disease dynamics and progression.
After graduating my PhD in statistics from the University Paris XI in 2005, working of the modelling of the French epidemic of variant Creutzfeldt-Jakob disease, I was awarded a personal grant to join the London School of Hygiene and Tropical Medicine. I joined Imperial College in 2005 as a Research Associate, and in 2009 I was appointed as a Research Fellow, in Prof Paolo Vineis's group. In 2011 I was promoted Lecturer, and Senior Lecturer (2016) in Statistical Bioinformatics in the Department of Epidemiology and Biostatistics. In 2013, I was awarded an Honorary Reader position at the Institute for Risk Assessment Sciences, at Utrecht University (NL). I also hold a degree of engineer in food sciences, majors in Statistics from a French `grande école’ from the 'Agro group' (ONIRIS, former ENITIAA).
While my background is in disease modelling, my post-doctoral experience focused on the development and application of statistical models to analyse OMICs data. From my involvement in several large-scale projects I gained experience in the analysis of genetic, epigenetic, transcriptomic, proteomic and metabolomic profiles.
Alongside my project-based research, I have maintained methodological activities relating to the development of longitudinal models for the risk and progression of chronic disease.
At the confluence of these two research streams, my current research focuses on the analysis and integration of OMICs markers in relation to complex exposures and or health outcomes. This work aims at characterising molecular signatures of the exposome (including environmental exposures and social factors) and to explore the mechanisms involved in the mediation of these effects.
Teaching - Supervision
Since 2018, I have been the programme director of the MSc in Health Data Analytics and Machine Learning, in collaboration with the Data Science Institute. In the course I also lead two modules.
I am also involved in the MSc Epidemiology where I lead the Advanced Topics in Biostatistics module.
I coordinate the `Exposome short couse series, which includes three one-week courses on statistical methods to explore the Exposome:
- Exposome Basis (Lead: R Vermeulen - Utrecht University)
- Exposome Advanced (Lead: M Chadeau-Hyam - ICL)
- Exposome Practice (Co-Lead: M Chadeau-Hyam - ICL - B Liquet UPPA, France)
I have or still am (co-)supervised 6 PhD students.
Publically available code:
et al., 2018, DNA Methylome Marks of Exposure to Particulate Matter at Three Time Points in Early Life, Environmental Science & Technology, Vol:52, ISSN:0013-936X, Pages:5427-5437
et al., 2018, The Exposome: Molecules to Populations., Annu Rev Pharmacol Toxicol
et al., 2015, Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation, Human Molecular Genetics, Vol:24, ISSN:0964-6906, Pages:2349-2359
et al., 2014, Investigating sources of variability in metabolomic data in the EPIC study: the Principal Component Partial R-square (PC-PR2) method, Metabolomics, Vol:10, ISSN:1573-3882, Pages:1074-1083
et al., 2015, Epigenetic signatures of internal migration in Italy, International Journal of Epidemiology, Vol:44, ISSN:0300-5771, Pages:1442-1449
et al., 2014, Prediagnostic transcriptomic markers of Chronic lymphocytic leukemia reveal perturbations 10 years before diagnosis, Annals of Oncology, Vol:25, ISSN:0923-7534, Pages:1065-1072
et al., 2014, Dynamics of the Risk of Smoking-Induced Lung Cancer A Compartmental Hidden Markov Model for Longitudinal Analysis, Epidemiology, Vol:25, ISSN:1044-3983, Pages:28-34
et al., 2003, Estimation of the exposure of the French population to the BSE agent: comparison of the 1980-95 consumption of beef products containing mechanically recovered meat in France and the UK, by birth cohort and gender, Statistical Methods in Medical Research, Vol:12, ISSN:0962-2802, Pages:247-260
Chadeau-Hyam M, Alperovitch A, 2005, Risk of variant Creutzfeldt-Jakob disease in France, International Journal of Epidemiology, Vol:34, ISSN:0300-5771, Pages:46-52
et al., 2007, Sequence-level population simulations over large genomic regions, Genetics, Vol:177, ISSN:0016-6731, Pages:1725-1731
et al., 2008, Fregene: Simulation of realistic sequence-level data in populations and ascertained samples, BMC Bioinformatics, Vol:9, ISSN:1471-2105
et al., 2010, An application of hidden Markov models to the French variant Creutzfeldt-Jakob disease epidemic, Journal of the Royal Statistical Society Series C - Applied Statistics, Vol:59, ISSN:0035-9254, Pages:839-853
et al., 2010, Metabolic Profiling and the Metabolome-Wide Association Study: Significance Level For Biomarker Identification, Journal of Proteome Research, Vol:9, ISSN:1535-3893, Pages:4620-4627
et al., 2011, ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration, Bioinformatics, Vol:27, ISSN:1367-4803, Pages:587-588
Jasra A, De Iorio M, Chadeau-Hyam M, 2011, The time machine: a simulation approach for stochastic trees, Proceedings of the Royal Society A: Mathematical, Physical & Engineering Sciences, Vol:467, ISSN:1364-5021, Pages:2350-2368
et al., 2012, Causal diagrams in systems epidemiology., Emerg Themes Epidemiol, Vol:9
Vermeulen R, Chadeau-Hyam M, 2012, Dynamic Aspects of Exposure History-Do They Matter?, Epidemiology, Vol:23, ISSN:1044-3983, Pages:900-901
et al., 2013, GUESS-ing Polygenic Associations with Multiple Phenotypes Using a GPU-Based Evolutionary Stochastic Search Algorithm, Plos Genetics, Vol:9, ISSN:1553-7404
et al., 2013, Deciphering the complex: Methodological overview of statistical models to derive OMICS-based biomarkers, Environmental and Molecular Mutagenesis, Vol:54, ISSN:0893-6692, Pages:542-557