Imperial College London

DrThibautJombart

Faculty of MedicineSchool of Public Health

Lecturer in Genetic Analysis
 
 
 
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Contact

 

+44 (0)20 7594 3658t.jombart Website

 
 
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Location

 

UG11Norfolk PlaceSt Mary's Campus

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Summary

 

Publications

Publication Type
Year
to

66 results found

Beugin M-P, Gayet T, Pontier D, Devillard S, Jombart Tet al., 2018, A fast likelihood solution to the genetic clustering problem, METHODS IN ECOLOGY AND EVOLUTION, Vol: 9, Pages: 1006-1016, ISSN: 2041-210X

JOURNAL ARTICLE

Campbell F, Strang C, Ferguson N, Cori A, Jombart Tet al., 2018, When are pathogen genome sequences informative of transmission events?, PLOS PATHOGENS, Vol: 14, ISSN: 1553-7366

JOURNAL ARTICLE

Dupuis JR, Bremer FT, Jombart T, Sim SB, Geib SMet al., 2018, mvmapper: Interactive spatial mapping of genetic structures, MOLECULAR ECOLOGY RESOURCES, Vol: 18, Pages: 362-367, ISSN: 1755-098X

JOURNAL ARTICLE

Nouvellet P, Cori A, Garske T, Blake IM, Dorigatti I, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Van Kerkhove MD, Fraser C, Donnelly CA, Ferguson NM, Riley Set al., 2018, A simple approach to measure transmissibility and forecast incidence, EPIDEMICS, Vol: 22, Pages: 29-35, ISSN: 1755-4365

JOURNAL ARTICLE

Bertranpetit E, Jombart T, Paradis E, Pena H, Dubey J, Su C, Mercier A, Devillard S, Ajzenberg Det al., 2017, Phylogeography of Toxoplasma gondii points to a South American origin, INFECTION GENETICS AND EVOLUTION, Vol: 48, Pages: 150-155, ISSN: 1567-1348

JOURNAL ARTICLE

Cori A, Donnelly CA, Dorigatti I, Ferguson NM, Fraser C, Garske T, Jombart T, Nedjati-Gilani G, Nouvellet P, Riley S, Van Kerkhove MD, Mills HL, Blake IMet al., 2017, Key data for outbreak evaluation: building on the Ebola experience, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 372, ISSN: 0962-8436

JOURNAL ARTICLE

Garske T, Cori A, Ariyarajah A, Blake IM, Dorigatti I, Eckmanns T, Fraser C, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Van Kerkhove MD, Dye C, Ferguson NM, Donnelly CAet al., 2017, Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013-2016, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 372, ISSN: 0962-8436

JOURNAL ARTICLE

Inns T, Ashton PM, Herrera-Leon S, Lighthill J, Foulkes S, Jombart T, Rehman Y, Fox A, Dallman T, De Pinna E, Browning L, Coia JE, Edeghere O, Vivancos Ret al., 2017, Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis, EPIDEMIOLOGY AND INFECTION, Vol: 145, Pages: 289-298, ISSN: 0950-2688

JOURNAL ARTICLE

Jombart T, Archer F, Schliep K, Kamvar Z, Harris R, Paradis E, Goudet J, Lapp Het al., 2017, apex: phylogenetics with multiple genes, MOLECULAR ECOLOGY RESOURCES, Vol: 17, Pages: 19-26, ISSN: 1755-098X

JOURNAL ARTICLE

Jombart T, Kendall M, Almagro-Garcia J, Colijn Cet al., 2017, treespace: Statistical exploration of landscapes of phylogenetic trees, MOLECULAR ECOLOGY RESOURCES, Vol: 17, Pages: 1385-1392, ISSN: 1755-098X

JOURNAL ARTICLE

Montano V, Jombart T, 2017, An Eigenvalue test for spatial principal component analysis, BMC BIOINFORMATICS, Vol: 18, ISSN: 1471-2105

JOURNAL ARTICLE

Paradis E, Gosselin T, Goudet J, Jombart T, Schliep Ket al., 2017, Linking genomics and population genetics with R, MOLECULAR ECOLOGY RESOURCES, Vol: 17, Pages: 54-66, ISSN: 1755-098X

JOURNAL ARTICLE

Paradis E, Gosselin T, Grunwald NJ, Jombart T, Manel S, Lapp Het al., 2017, Towards an integrated ecosystem of R packages for the analysis of population genetic data, MOLECULAR ECOLOGY RESOURCES, Vol: 17, Pages: 1-4, ISSN: 1755-098X

JOURNAL ARTICLE

Agua-Agum J, Allegranzi B, Ariyarajah A, Aylward RB, Blake IM, Barboza P, Bausch D, Brennan RJ, Clement P, Coffey P, Cori A, Donnelly CA, Dorigatti I, Drury P, Durski K, Dye C, Eckmanns T, Ferguson NM, Fraser C, Garcia E, Garske T, Gasasira A, Gurry C, Gutierrez GJ, Hamblion E, Hinsley W, Holden R, Holmes D, Hugonnet S, Jombart T, Kelley E, Santhana R, Mahmoud N, Mills HL, Mohamed Y, Musa E, Naidoo D, Nedjati-Gilani G, Newton E, Norton I, Nouvellet P, Perkins D, Perkins M, Riley S, Schumacher D, Shah A, Minh T, Varsaneux O, Van Kerkhove MDet al., 2016, After Ebola in West Africa - Unpredictable Risks, Preventable Epidemics, NEW ENGLAND JOURNAL OF MEDICINE, Vol: 375, Pages: 587-596, ISSN: 0028-4793

JOURNAL ARTICLE

Agua-Agum J, Ariyarajah A, Aylward B, Bawo L, Bilivogui P, Blake IM, Brennan RJ, Cawthorne A, Cleary E, Clement P, Conteh R, Cori A, Dafae F, Dahl B, Dangou J-M, Diallo B, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Fallah M, Ferguson NM, Fiebig L, Fraser C, Garske T, Gonzalez L, Hamblion E, Hamid N, Hersey S, Hinsley W, Jambei A, Jombart T, Kargbo D, Keita S, Kinzer M, George FK, Godefroy B, Gutierrez G, Kannangarage N, Mills HL, Moller T, Meijers S, Mohamed Y, Morgan O, Nedjati-Gilani G, Newton E, Nouvellet P, Nyenswah T, Perea W, Perkins D, Riley S, Rodier G, Rondy M, Sagrado M, Savulescu C, Schafer IJ, Schumacher D, Seyler T, Shah A, Van Kerkhove MD, Wesseh CS, Yoti Zet al., 2016, Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study, PLOS MEDICINE, Vol: 13, ISSN: 1549-1676

JOURNAL ARTICLE

Agua-Agum J, Ariyarajah A, Blake IM, Cori A, Donnelly CA, Dorigatti I, Dye C, Eck-Manns T, Ferguson NM, Fraser C, Garske T, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Thomas LJ, Van Kerkhove MDet al., 2016, Ebola Virus Disease among Male and Female Persons in West Africa, NEW ENGLAND JOURNAL OF MEDICINE, Vol: 374, Pages: 96-98, ISSN: 0028-4793

JOURNAL ARTICLE

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DAT, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NMet al., 2016, Unraveling the drivers of MERS-CoV transmission, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 113, Pages: 9081-9086, ISSN: 0027-8424

JOURNAL ARTICLE

Clare FC, Halder JB, Daniel O, Bielby J, Semenov MA, Jombart T, Loyau A, Schmeller DS, Cunningham AA, Rowcliffe M, Garner TWJ, Bosch J, Fisher MCet al., 2016, Climate forcing of an emerging pathogenic fungus across a montane multi-host community, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 371, ISSN: 0962-8436

JOURNAL ARTICLE

Dallman T, Inns T, Jombart T, Ashton P, Loman N, Chatt C, Messelhaeusser U, Rabsch W, Simon S, Nikisins S, Bernard H, le Hello S, da-Silva NJ, Kornschober C, Mossong J, Hawkey P, De Pinna E, Grant K, Cleary Pet al., 2016, Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network, MICROBIAL GENOMICS, Vol: 2, ISSN: 2057-5858

JOURNAL ARTICLE

Finnie TJR, South A, Bento A, Sherrard-Smith E, Jombart Tet al., 2016, EpiJSON: A unified data-format for epidemiology, EPIDEMICS, Vol: 15, Pages: 20-26, ISSN: 1755-4365

JOURNAL ARTICLE

Karkey A, Jombart T, Walker AW, Thompson CN, Torres A, Dongol S, Nga TVT, Duy PT, Dung TTN, Phat VV, Singer AC, Parkhill J, Thwaites G, Basnyat B, Ferguson N, Baker Set al., 2016, The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water, PLOS NEGLECTED TROPICAL DISEASES, Vol: 10, ISSN: 1935-2735

JOURNAL ARTICLE

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DATet al., 2016, Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia, AMERICAN JOURNAL OF EPIDEMIOLOGY, Vol: 183, Pages: 657-663, ISSN: 0002-9262

JOURNAL ARTICLE

Agua-Agum J, Ariyarajah A, Blake IM, Cori A, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Ferguson NM, Fowler RA, Fraser C, Garske T, Hinsley W, Jombart T, Mills HL, Murthy S, Nedjati-Gilani G, Nouvellet P, Pelletier L, Riley S, Schumacher D, Shah A, Van Kerkhove MDet al., 2015, Ebola Virus Disease among Children in West Africa, NEW ENGLAND JOURNAL OF MEDICINE, Vol: 372, Pages: 1274-1277, ISSN: 0028-4793

JOURNAL ARTICLE

Hao CT, Karkey A, Duy PT, Boinett CJ, Cain AK, Ellington M, Baker KS, Dongol S, Thompson C, Harris SR, Jombart T, Tu LTP, Nhu TDH, Tuyen HT, Shretha S, Joshi S, Basnyat B, Thwaites G, Thomson NR, Rabaa MA, Baker Set al., 2015, A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae, EMBO MOLECULAR MEDICINE, Vol: 7, Pages: 227-239, ISSN: 1757-4676

JOURNAL ARTICLE

Jombart T, Kendall ML, Almagro-Garcia J, Colijn Cet al., 2015, treespace

Statistical Exploration of Landscapes of Phylogenetic Trees

SOFTWARE

Mita T, Jombart T, 2015, Patterns and dynamics of genetic diversity in Plasmodium falciparum: What past human migrations tell us about malaria, PARASITOLOGY INTERNATIONAL, Vol: 64, Pages: 238-243, ISSN: 1383-5769

JOURNAL ARTICLE

Nhung NT, Cuong NV, Campbell J, Hoa NT, Bryant JE, Truc VNT, Kiet BT, Jombart T, Trung NV, Hien VB, Thwaites G, Baker S, Carrique-Mas Jet al., 2015, High Levels of Antimicrobial Resistance among Escherichia coli Isolates from Livestock Farms and Synanthropic Rats and Shrews in the Mekong Delta of Vietnam, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol: 81, Pages: 812-820, ISSN: 0099-2240

JOURNAL ARTICLE

Nouvellet P, Garske T, Mills HL, Nedjati-Gilani G, Hinsley W, Blake IM, Van Kerkhove MD, Cori A, Dorigatti I, Jombart T, Riley S, Fraser C, Donnelly CA, Ferguson NMet al., 2015, The role of rapid diagnostics in managing Ebola epidemics, NATURE, Vol: 528, Pages: S109-S116, ISSN: 0028-0836

JOURNAL ARTICLE

Tong SYC, Holden MTG, Nickerson EK, Cooper BS, Koeser CU, Cori A, Jombart T, Cauchemez S, Fraser C, Wuthiekanun V, Thaipadungpanit J, Hongsuwan M, Day NP, Limmathurotsakul D, Parkhill J, Peacock SJet al., 2015, Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting, GENOME RESEARCH, Vol: 25, Pages: 111-118, ISSN: 1088-9051

JOURNAL ARTICLE

Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Vaelimaeki N, Harris D, Tran TBC, Nguyen VVC, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Ngo TH, Holden MTG, Tucker AW, Maskell DJet al., 2015, Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (vol 6, 6740, 2015), NATURE COMMUNICATIONS, Vol: 6, ISSN: 2041-1723

JOURNAL ARTICLE

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