Imperial College London
Alternate

DrThibautJombart

Faculty of Medicine, School of Public Health

Senior Lecturer
 
 
 
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Contact

 

+44 (0)20 7594 3658t.jombart Website

 
 
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Location

 

UG11Norfolk PlaceSt Mary's Campus

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Summary

 

Publications

Citation

BibTex format

@article{Dupuis:2018:10.1111/1755-0998.12724,
author = {Dupuis, JR and Bremer, FT and Jombart, T and Sim, SB and Geib, SM},
doi = {10.1111/1755-0998.12724},
journal = {Molecular Ecology Resources},
pages = {362--367},
title = {mvmapper: Interactive spatial mapping of genetic structures},
url = {http://dx.doi.org/10.1111/1755-0998.12724},
volume = {18},
year = {2018}
}
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RIS format (EndNote, RefMan)

TY  - JOUR
AB  - Characterizing genetic structure across geographic space is a fundamental challenge in population genetics. Multivariate statistical analyses are powerful tools for summarizing genetic variability, but geographic information and accompanying metadata are not always easily integrated into these methods in a user-friendly fashion. Here, we present a deployable Python-based web-tool, mvmapper, for visualizing and exploring results of multivariate analyses in geographic space. This tool can be used to map results of virtually any multivariate analysis of georeferenced data, and routines for exporting results from a number of standard methods have been integrated in the R package adegenet, including principal components analysis (PCA), spatial PCA, discriminant analysis of principal components, principal coordinates analysis, nonmetric dimensional scaling and correspondence analysis. mvmapper's greatest strength is facilitating dynamic and interactive exploration of the statistical and geographic frameworks side by side, a task that is difficult and time-consuming with currently available tools. Source code and deployment instructions, as well as a link to a hosted instance of mvmapper, can be found at https://popphylotools.github.io/mvMapper/.
AU  - Dupuis,JR
AU  - Bremer,FT
AU  - Jombart,T
AU  - Sim,SB
AU  - Geib,SM
DO  - 10.1111/1755-0998.12724
EP  - 367
PY  - 2018///
SN  - 1755-098X
SP  - 362
TI  - mvmapper: Interactive spatial mapping of genetic structures
T2  - Molecular Ecology Resources
UR  - http://dx.doi.org/10.1111/1755-0998.12724
UR  - http://hdl.handle.net/10044/1/55977
VL  - 18
ER  -
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