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@article{Sengar:2021:10.3389/fmolb.2021.693710,
author = {Sengar, A and Ouldridge, TE and Henrich, O and Rovigatti, L and Sulc, P},
doi = {10.3389/fmolb.2021.693710},
journal = {Frontiers in Molecular Biosciences},
pages = {1--22},
title = {A primer on the oxDNA model of DNA: When to use it, how to simulate it and how to interpret the results},
url = {http://dx.doi.org/10.3389/fmolb.2021.693710},
volume = {8},
year = {2021}
}

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TY  - JOUR
AB  - The oxDNA model of DNA has been applied widely to systems in biology,biophysics and nanotechnology. It is currently available via two independentopen source packages. Here we present a set of clearly-documented exemplarsimulations that simultaneously provide both an introduction to simulating themodel, and a review of the model's fundamental properties. We outline howsimulation results can be interpreted in terms of -- and feed into ourunderstanding of -- less detailed models that operate at larger length scales,and provide guidance on whether simulating a system with oxDNA is worthwhile.
AU  - Sengar,A
AU  - Ouldridge,TE
AU  - Henrich,O
AU  - Rovigatti,L
AU  - Sulc,P
DO  - 10.3389/fmolb.2021.693710
EP  - 22
PY  - 2021///
SN  - 2296-889X
SP  - 1
TI  - A primer on the oxDNA model of DNA: When to use it, how to simulate it and how to interpret the results
T2  - Frontiers in Molecular Biosciences
UR  - http://dx.doi.org/10.3389/fmolb.2021.693710
UR  - http://arxiv.org/abs/2104.11567v1
UR  - https://www.frontiersin.org/articles/10.3389/fmolb.2021.693710/full
UR  - http://hdl.handle.net/10044/1/89298
VL  - 8
ER  -

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