Publications
196 results found
Savolainen V, Chase MW, 2003, A decade of progress in plant molecular phylogenetics, TRENDS IN GENETICS, Vol: 19, Pages: 717-724, ISSN: 0168-9525
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- Citations: 75
Hilu KW, Borsch T, Müller K, et al., 2003, Angiosperm phylogeny based on matK sequence information, AMERICAN JOURNAL OF BOTANY, Vol: 90, Pages: 1758-1776, ISSN: 0002-9122
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- Citations: 412
Loeuille B, Goldblatt P, Manning JC, et al., 2003, Molecular phylogeny of genus Moraea (Iridaceae: Irideae):: DNA sequences analysis, ACTA BOTANICA GALLICA, Vol: 150, Pages: 345-353, ISSN: 1253-8078
Chase MW, Knapp S, Cox AV, et al., 2003, Molecular systematics, GISH and the origin of hybrid taxa in <i>Nicotiana</i> (Solanaceae), ANNALS OF BOTANY, Vol: 92, Pages: 107-127, ISSN: 0305-7364
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- Citations: 232
Salamin N, Chase MW, Hodkinson TR, et al., 2003, Assessing internal support with large phylogenetic DNA matrices, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 27, Pages: 528-539, ISSN: 1055-7903
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- Citations: 64
Bremer B, Bremer K, Chase MW, et al., 2003, An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants:: APG II, BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, Vol: 141, Pages: 399-436, ISSN: 0024-4074
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- Citations: 184
Perret M, Chautems A, Spichiger R, et al., 2003, Systematics and evolution of tribe Sinningieae (Gesneriaceae):: Evidence from phylogenetic analyses of six plastid DNA regions and nuclear <i>ncpGS</i>, AMERICAN JOURNAL OF BOTANY, Vol: 90, Pages: 445-460, ISSN: 0002-9122
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- Citations: 111
Wikström N, Savolainen V, Chase MW, 2003, Angiosperm divergence times:: congruence and incongruence between fossils and sequence divergence estimates, Joint Palaentological-Association/Systematic-Assocation Symposium held at the 3rd Biennial Meeting of the Systematic-Association, Publisher: CRC PRESS-TAYLOR & FRANCIS GROUP, Pages: 142-165, ISSN: 0309-2593
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- Citations: 37
Savolainen V, Heard SB, Powell MP, et al., 2002, Is cladogenesis heritable?, SYSTEMATIC BIOLOGY, Vol: 51, Pages: 835-843, ISSN: 1063-5157
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- Citations: 25
Savolainen V, Heard SB, Powell MP, et al., 2002, Is cladogenesis heritable?, Symposium on Developing Uses for Phylogenetic Tree Shape in the Study of Evolution, Pages: 835-843
The heritability of speciation rates and extinction risks is a crucial parameter in models of macroevolution, but little direct evidence has been available to assess the occurrence, strength, or generality of this heritability. We tested for heritability using correlations between ancestral and descendent branch lengths in phylogenetic trees, an approach first applied to a bird phylogeny by Harvey et al. (1991, pages 123-137 in Genes in ecology [R. J. Berry et al., eds.], Blackwell Scientific, Oxford). We applied Harvey et al.'s test to some of the largest DNA sequence-based phylogenetic analyses published to date for plants, insects, fungi, and bacteria.. If one of two parent lineages splits first and if this is the case for any heritable reason, then on average we expect its daughter lineages to also split first. We also used a randomization procedure to assess significance of branch length heritability Using maximum parsimony and maximum likelihood branch lengths and trees made ultrametric after nonparametric rate smoothing or by enforcing a molecular clock, we found a pattern for most clades consistent with heritable net cladogenesis. Heritability of cladogenesis maybe a general phenomenon, detectable across a large number of lineages and a broad range of taxa.
Goldblatt P, Savolainen V, Porteous O, et al., 2002, Radiation in the Cape flora and the phylogeny of peacock irises <i>Moraea</i> (Iridaceae) based on four plastid DNA regions, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 25, Pages: 341-360, ISSN: 1055-7903
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- Citations: 126
Savolainen V, Chase MW, Salamin N, et al., 2002, Phylogeny reconstruction and functional constraints in organellar genomes:: Plastid <i>atpB</i> and <i>rbcL</i> sequences versus animal mitochondrion, SYSTEMATIC BIOLOGY, Vol: 51, Pages: 638-647, ISSN: 1063-5157
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- Citations: 15
Soltis PS, Soltis DE, Savolainen V, et al., 2002, Rate heterogeneity among lineages of tracheophytes: Integration of molecular and fossil data and evidence for molecular living fossils, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 99, Pages: 4430-4435, ISSN: 0027-8424
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- Citations: 208
Salamin N, Hodkinson TR, Savolainen V, 2002, Building supertrees: An empirical assessment using the grass family (Poaceae), SYSTEMATIC BIOLOGY, Vol: 51, Pages: 136-150, ISSN: 1063-5157
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- Citations: 81
Cuénoud P, Savolainen V, Chatrou LW, et al., 2002, Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid <i>rbcL</i>, <i>atpB</i>, and <i>matK</i> DNA sequences, AMERICAN JOURNAL OF BOTANY, Vol: 89, Pages: 132-144, ISSN: 0002-9122
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- Citations: 463
Wikström N, Savolainen V, Chase MW, 2001, Evolution of the angiosperms:: calibrating the family tree, PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 268, Pages: 2211-2220, ISSN: 0962-8452
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- Citations: 1237
Simmons MP, Savolainen V, Clevinger CC, et al., 2001, Phylogeny of the celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, <i>rbcL</i>, <i>atpB</i>, and morphology, MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 19, Pages: 353-366, ISSN: 1055-7903
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- Citations: 84
Barraclough TG, Savolainen V, 2001, Evolutionary rates and species diversity in flowering plants, EVOLUTION, Vol: 55, Pages: 677-683, ISSN: 0014-3820
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- Citations: 175
Perret M, Chautems A, Spichiger R, et al., 2001, Nectar sugar composition in relation to pollination syndromes in sinningieae (Gesneriaceae), ANNALS OF BOTANY, Vol: 87, Pages: 267-273, ISSN: 0305-7364
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- Citations: 112
Simmons MP, Clevinger CC, Savolainen V, et al., 2001, Phylogeny of the Celastraceae inferred from phytochrome B gene sequence and morphology, AMERICAN JOURNAL OF BOTANY, Vol: 88, Pages: 313-325, ISSN: 0002-9122
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- Citations: 72
Barraclough TG, Savolainen V, 2001, EVOLUTIONARY RATES AND SPECIES DIVERSITY IN FLOWERING PLANTS, Evolution, Vol: 55, Pages: 677-677, ISSN: 0014-3820
Chase MW, Fay MF, Savolainen V, 2000, Higher-level classification in the angiosperms: new insights from the perspective of DNA sequence data, TAXON, Vol: 49, Pages: 685-704, ISSN: 0040-0262
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- Citations: 63
SOLTIS D, 2000, Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences, Botanical Journal of the Linnean Society, Vol: 133, Pages: 381-461, ISSN: 0024-4074
Soltis DE, Soltis PS, Chase MW, et al., 2000, Angiosperm phylogeny inferred from 18S rDNA, <i>rbcL</i>, and <i>atpB</i> sequences, BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, Vol: 133, Pages: 381-461, ISSN: 0024-4074
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- Citations: 1105
Savolainen V, Chase MW, Hoot SB, et al., 2000, Phylogenetics of flowering plants based on combined analysis of plastid <i>atpB</i> and <i>rbcL</i> gene sequences, SYSTEMATIC BIOLOGY, Vol: 49, Pages: 306-362, ISSN: 1063-5157
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- Citations: 466
Qiu YL, Lee J, Bernasconi-Quadroni F, et al., 2000, The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes (vol 402, pg 404, 1999), NATURE, Vol: 405, Pages: 101-U20, ISSN: 0028-0836
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- Citations: 2
Qiu YL, Lee JH, Bernasconi-Quadroni F, et al., 1999, The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes, NATURE, Vol: 402, Pages: 404-407, ISSN: 0028-0836
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- Citations: 675
BAYER C, 1999, Support for an expanded family concept of Malvaceae within a recircumscribed order Malvales: a combined analysis of plastidatpB andrbcL DNA sequences, Botanical Journal of the Linnean Society, Vol: 129, Pages: 267-303, ISSN: 0024-4074
Bayer C, Fay MF, De Bruijn PY, et al., 1999, Support for an expanded family concept of Malvaceae within a recircumscribed order Malvales:: a combined analysis of plastid <i>atp</i>B and <i>rbc</i>L DNA sequences, BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, Vol: 129, Pages: 267-303, ISSN: 0024-4074
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- Citations: 219
Ruedi M, Auberson M, Savolainen V, 1998, Biogeography of Sulawesian shrews: Testing for their origin with a parametric bootstrap on molecular data (vol 9, pg 567, 1998), MOLECULAR PHYLOGENETICS AND EVOLUTION, Vol: 10, Pages: 269-270, ISSN: 1055-7903
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