DrXavierDidelot

Didelot X, Nell S, Yang I, Woltemate S, van der Merwe S, Suerbaum Set al., 2013, Genomic evolution and transmission of <i>Helicobacter pylori</i> in two South African families, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 110, Pages: 13880-13885, ISSN: 0027-8424

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• Citations: 85

Sheppard SK, Didelot X, Meric G, Torralbo A, Jolley KA, Kelly DJ, Bentley SD, Maiden MCJ, Parkhill J, Falush Det al., 2013, Genome-wide association study identifies vitamin B₅ biosynthesis as a host specificity factor in <i>Campylobacter</i>, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 110, Pages: 11923-11927, ISSN: 0027-8424

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• Citations: 182

Golubchik T, Batty EM, Miller RR, Farr H, Young BC, Larner-Svensson H, Fung R, Godwin H, Knox K, Votintseva A, Everitt RG, Street T, Cule M, Ip CLC, Didelot X, Peto TEA, Harding RM, Wilson DJ, Crook DW, Bowden Ret al., 2013, Within-Host Evolution of <i>Staphylococcus aureus</i> during Asymptomatic Carriage, PLOS ONE, Vol: 8, ISSN: 1932-6203

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• Citations: 144

Didelot X, 2013, Genomic analysis to improve the management of outbreaks of bacterial infection, EXPERT REVIEW OF ANTI-INFECTIVE THERAPY, Vol: 11, Pages: 335-337, ISSN: 1478-7210

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• Citations: 3

Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean Det al., 2013, Comparative Analysis of <i>Chlamydia psittaci</i> Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range, MBIO, Vol: 4, ISSN: 2150-7511

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• Citations: 68

Dingle KE, Didelot X, Ansari MA, Eyre DW, Vaughan A, Griffiths D, Ip CLC, Batty EM, Golubchik T, Bowden R, Jolley KA, Hood DW, Fawley WN, Walker AS, Peto TE, Wilcox MH, Crook DWet al., 2013, Recombinational Switching of the <i>Clostridium difficile</i> S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing, JOURNAL OF INFECTIOUS DISEASES, Vol: 207, Pages: 675-686, ISSN: 0022-1899

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• Citations: 74

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Ronningen KS, Rudi K, Stenseth NC, Trosvik Pet al., 2013, Comparisons of infant <i>Escherichia coli</i> isolates link genomic profiles with adaptation to the ecological niche, BMC GENOMICS, Vol: 14, ISSN: 1471-2164

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• Citations: 9

Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJC, Ogden ID, Forbes K, French NP, Carter P, Miller WG, Mccarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MCJ, Falush Det al., 2013, Progressive genome-wide introgression in agricultural <i>Campylobacter coli</i>, MOLECULAR ECOLOGY, Vol: 22, Pages: 1051-1064, ISSN: 0962-1083

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• Citations: 96

Price JR, Didelot X, Crook DW, Llewelyn MJ, Paul Jet al., 2013, Whole genome sequencing in the prevention and control of <i>Staphylococcus aureus</i> infection, JOURNAL OF HOSPITAL INFECTION, Vol: 83, Pages: 14-21, ISSN: 0195-6701

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• Citations: 45

Joseph SJ, Didelot X, Rothschild J, de Vries HJC, Morre SA, Read TD, Dean Det al., 2012, Population Genomics of <i>Chlamydia trachomatis</i>: Insights on Drift, Selection, Recombination, and Population Structure, MOLECULAR BIOLOGY AND EVOLUTION, Vol: 29, Pages: 3933-3946, ISSN: 0737-4038

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• Citations: 71

Didelot X, Bowden R, Wilson DJ, Peto TEA, Crook DWet al., 2012, Transforming clinical microbiology with bacterial genome sequencing, NATURE REVIEWS GENETICS, Vol: 13, Pages: 601-612, ISSN: 1471-0056

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• Citations: 488

Zwick ME, Joseph SJ, Didelot X, Chen PE, Bishop-Lilly KA, Stewart AC, Willner K, Nolan N, Lentz S, Thomason MK, Sozhamannan S, Mateczun AJ, Du L, Read TDet al., 2012, Genomic characterization of the <i>Bacillus cereus</i> sensu lato species: Backdrop to the evolution of <i>Bacillus anthracis</i>, GENOME RESEARCH, Vol: 22, Pages: 1512-1524, ISSN: 1088-9051

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• Citations: 121

Zhang L, Thomas JC, Didelot X, Robinson DAet al., 2012, Molecular Signatures Identify a Candidate Target of Balancing Selection in an <i>arcD</i>-Like Gene of <i>Staphylococcus epidermidis</i>, JOURNAL OF MOLECULAR EVOLUTION, Vol: 75, Pages: 43-54, ISSN: 0022-2844

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• Citations: 7

Didelot X, Meric G, Falush D, Darling AEet al., 2012, Impact of homologous and non-homologous recombination in the genomic evolution of <i>Escherichia coli</i>, BMC GENOMICS, Vol: 13, ISSN: 1471-2164

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• Citations: 89

Achtman M, Wain J, Weill FX, Nair S, Zhou Z, Sangal V, Krauland M, Hale J, Harbottle H, Uesbeck A, Dougan G, Harrison L, Brisse S, the S enterica MLST study groupet al., 2012, Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica, PLoS Pathogens, Vol: 8

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Moccia C, Krebes J, Kulick S, Didelot X, Kraft C, Bahlawane C, Suerbaum Set al., 2012, The nucleotide excision repair (NER) system of <i>Helicobacter pylori</i>: Role in mutation prevention and chromosomal import patterns after natural transformation, BMC MICROBIOLOGY, Vol: 12, ISSN: 1471-2180

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• Citations: 17

Namouchi A, Didelot X, Schoeck U, Gicquel B, Rocha EPCet al., 2012, After the bottleneck: Genome-wide diversification of the <i>Mycobacterium tuberculosis</i> complex by mutation, recombination, and natural selection, GENOME RESEARCH, Vol: 22, Pages: 721-734, ISSN: 1088-9051

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• Citations: 109

Young BC, Golubchik T, Batty EM, Fung R, Larner-Svensson H, Votintseva AA, Miller RR, Godwin H, Knox K, Everitt RG, Iqbal Z, Rimmer AJ, Cule M, Ip CLC, Didelot X, Harding RM, Donnelly P, Peto TE, Crook DW, Bowden R, Wilson DJet al., 2012, Evolutionary dynamics of <i>Staphylococcus aureus</i> during progression from carriage to disease, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 109, Pages: 4550-4555, ISSN: 0027-8424

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• Citations: 197

Cadillo-Quiroz H, Didelot X, Held NL, Herrera A, Darling A, Reno ML, Krause DJ, Whitaker RJet al., 2012, Patterns of Gene Flow Define Species of Thermophilic Archaea, PLOS BIOLOGY, Vol: 10, ISSN: 1544-9173

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• Citations: 144

Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CLC, Wilson DJ, Didelot X, O'Connor L, Lay R, Buck D, Kearns AM, Shaw A, Paul J, Wilcox MH, Donnelly PJ, Peto TEA, Walker AS, Crook DWet al., 2012, A pilot study of rapid benchtop sequencing of <i>Staphylococcus aureus</i> and <i>Clostridium difficile</i> for outbreak detection and surveillance, BMJ OPEN, Vol: 2, ISSN: 2044-6055

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• Citations: 195

Didelot X, Eyre DW, Cule M, Ip CLC, Ansari MA, Griffiths D, Vaughan A, O'Connor L, Golubchik T, Batty EM, Piazza P, Wilson DJ, Bowden R, Donnelly PJ, Dingle KE, Wilcox M, Walker AS, Crook DW, Peto TEA, Harding RMet al., 2012, Microevolutionary analysis of <i>Clostridium difficile</i> genomes to investigate transmission, GENOME BIOLOGY, Vol: 13, ISSN: 1474-760X

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• Citations: 148

Laukkanen-Ninios R, Didelot X, Jolley KA, Morelli G, Sangal V, Kristo P, Brehony C, Imori PFM, Fukushima H, Siitonen A, Tseneva G, Voskressenskaya E, Falcao JP, Korkeala H, Maiden MCJ, Mazzoni C, Carniel E, Skurnik M, Achtman Met al., 2011, Population structure of the <i>Yersinia pseudotuberculosis</i> complex according to multilocus sequence typing, ENVIRONMENTAL MICROBIOLOGY, Vol: 13, Pages: 3114-3127, ISSN: 1462-2912

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• Citations: 57

Gripp E, Hlahla D, Didelot X, Kops F, Maurischat S, Tedin K, Alter T, Ellerbroek L, Schreiber K, Schomburg D, Janssen T, Bartholomaues P, Hofreuter D, Woltemate S, Uhr M, Brenneke B, Gruening P, Gerlach G, Wieler L, Suerbaum S, Josenhans Cet al., 2011, Closely related <i>Campylobacter jejuni</i> strains from different sources reveal a generalist rather than a specialist lifestyle, BMC GENOMICS, Vol: 12, ISSN: 1471-2164

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• Citations: 89

Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D, Donnelly Pet al., 2011, Recombination and Population Structure in <i>Salmonella enterica</i>, PLOS GENETICS, Vol: 7, ISSN: 1553-7404

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• Citations: 107

Joseph SJ, Didelot X, Gandhi K, Dean D, Read TDet al., 2011, Interplay of recombination and selection in the genomes of <i>Chlamydia trachomatis</i>, BIOLOGY DIRECT, Vol: 6

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• Citations: 62

Dingle KE, Griffiths D, Didelot X, Evans J, Vaughan A, Kachrimanidou M, Stoesser N, Jolley KA, Golubchik T, Harding RM, Peto TE, Fawley W, Walker AS, Wilcox M, Crook DWet al., 2011, Clinical <i>Clostridium difficile</i>: Clonality and Pathogenicity Locus Diversity, PLOS ONE, Vol: 6, ISSN: 1932-6203

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• Citations: 136

Kennemann L, Didelot X, Aebischer T, Kuhn S, Drescher B, Droege M, Reinhardt R, Correa P, Meyer TF, Josenhans C, Falush D, Suerbaum Set al., 2011, <i>Helicobacter pylori</i> genome evolution during human infection, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 108, Pages: 5033-5038, ISSN: 0027-8424

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• Citations: 184

Didelot X, Everitt R, Johansen A, Lawson Det al., 2011, Likelihood-free estimation of model evidence, Bayesian Analysis, Vol: 6, Pages: 48-76

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Didelot X, Lawson D, Darling A, Falush Det al., 2010, Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences, GENETICS, Vol: 186, Pages: 1435-U567, ISSN: 0016-6731

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• Citations: 112

Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, Didelot X, Paglietti B, Rabsch W, Brisse S, Weill F-X, Roumagnac P, Achtman Met al., 2010, Evolution and Population Structure of <i>Salmonella enterica</i> Serovar Newport, JOURNAL OF BACTERIOLOGY, Vol: 192, Pages: 6465-6476, ISSN: 0021-9193

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• Citations: 93