Teaching
Notes from some of Tom's courses, past and present
BE3-HMIB Modelling in Biology
I will be teaching this course in 2016/2017 along with Dr Guy-Bart Stan.
Detailed course notes can be found here.
Lecture slides can be downoladed from here.
Matlab exercises can be downloaded from here.
Notes from previous Biophysics lectures and tutorials
- Lectures on equilibrium binding and kinetic proofreading (guest lecturer on Vahid Shahrezaei's Mathematical Biology of the Cell course at Imperial College).
- Lecture notes and problems on cellular chemosensing (guest lecturer on Nick Jones' Inference, Control and Driving in Natural Systems course at Imperial College).
- Brief thoughts on the meaning and importance of free energy (written to complement the third year physics course at Oxford).
- My thoughts on Stokes' Flow (written to complement the third year physics course at Oxford).
A former course on molecular simulation methods
- Lecture notes and reference list for a course on molecular simulation (Molecular Simulation Methods in Chemistry at Oxford University).
Tutorial notes from a former course on atomic and molecular physics
- My discussion of LS-coupling (written to complement the third year physics course at Oxford).
- My summary of the Born-Oppenheimer approximation (written to complement the third year physics course at Oxford).
Tutorial notes from a former course on condensed matter physics
- My thoughts on crystallography (written to complement the third year physics course at Oxford).
- My basic treatment of band theory (written to complement the third year physics course at Oxford).
- A qauntum-mechanical approach to phonons (written to complement the third year physics course at Oxford).