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Introduction to R-type lectins
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Interpro entry: Ricin B lectin
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- Alignment of R-type CRD sequences.
The sequences are categorized as 1) Mannose receptor family and 2) Plant
toxins, bacterial hydrolases and eukaryotic GalNAc transferases. Each block of
sequences represents one of the three lobes of the R-type CRD. Regions of secondary structure
are indicated above the alignment and coloured to correspond with the
structure of the R-type CRD from murine GalNAc transferase 1, left. Beta-strands are numbered
S1-S12 and highlighted in blue.
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- Cysteine residues are highlighted in
yellow. Residues in ricin that interact with galactoside
ligands, and the conserved equivalents in
other R-type lectins, are highlighted in
magenta: one aromatic residue stacks against the galactose ring, while
hydrophilic residues make hydrogen bonds to the hydroxyl groups. Residues in the
third lobe of the macrophage mannose receptor R-type CRD that interact with
4-sulpho-N-acetylgalactosamine, and the conserved equivalents in other family members, are highlighted in
blue: an aromatic residue stacks against the galactose ring,
and hydrogen
bonds contribute to sulphate recognition.
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Jump to:
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1) Mannose receptor family
- 2)
Plant toxins, bacterial hydrolases, eukaryotic GalNAc
transferases
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Accession numbers
-
HS = human, MM = mouse, BT = cow, GG = chicken, XT = Xenopus, TR =
pufferfish
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DM = Drosophila, CE = C elegans
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- -Mannose receptor
family
- Macrophage mannose receptor (MMR) HS
P22897
MM
Q61830 BT
20478 XT
01366 GG1
08638 2
08629 TR
126868.
- Endo180 HS
Q9UBG0 MM
Q64449 BT
15739 GG
00461 XT
05331 TR
160040.
- Phospholipase A2 receptor (PLA2R) HS
Q13018
MM
Q62028 BT
P49259 GG
11149 TR
132119.
- DEC205 HS
O60449 MM
Q60767 GG
Q4LDF5 XT
07579 TR
161744.
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-Plant toxins, bacterial hydrolases
- Ricin
P02879; Xylanase from Streptomyces lividans
P26514; Arabinosidase from Streptomyces lividans
P96463; Protease from Rarobacter faecitabidus
Q05308; Glucanase from Arthrobacter
Q59146
- -GalNAc transferases
(GALNTs)
- HS
Q10472.
-
DM 1
Q6VW20; 2
Q6WV19; 3
Q9Y117; 4
Q8IA42; 5
Q6WV17; 6
Q6WV16; 7
Q8MV48;
-
8
Q9VUT6; 9
Q8MRC9; 10
Q8IA43; 11
Q8IA41; 12
Q8IA44; 13
Q8MYY6; 35
Q8MVS5.
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CE 3
P34678; 4
Q8I136; 5
Q95ZJ1; 6
O61394; 7
O61397; 9
Q9U2C4; 10
O45947; 11
Q7K755.
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If alignments appear scrambled please
maximize the width of your browser window.
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Structure of the R-type CRD from murine
GalNAc-transferase 1
Protein Data Bank structure ID:
1XHB.
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Mannose Receptor Family
HS
MMR
TRQFLIYNEDHKRCVDAVSPS---------AVQTAACNQ--DAESQKFRWVSE
MM
MMR ARQFLIYNEDHKRCVDALSAI---------SVQTATCNP--EAESQKFRWVSD
BT
MMR TRPFLIYNEDHKRCVEALSPS---------AVQTAVCDP--NNEAQKFRWVSE
XT
MMR
SSIFSIYNEEHKVCLQAQISG---------AIVTAPCKD--NNDLQKFRWISL
GG
MMR1 TEIFLIYNKVSKLCLQASIAQ---------SVRTATCHQ--DNESQKFTWITD
GG
MMR2 TSTFLIYNEDHKRCVLAQSSN---------SVTTTPCVQ--ENESQKFRWVSD
TR
MMR TGSFLIFNENHKKCIKVESPT---------SITVAQCDP--HAKDQQFRWASE
HS
Endo180
PNIFLIFSHGLQGCLEAQGGQ---------VRVTPACNT--SLPAQRWKWVSR
MM
Endo180 PDVFLIFSQGMQGCLEAQGVQ---------VRVTPFCNA--SLPAQRWKWVSR
BT Endo180 PNVFVIFSHGLQGCLEAQGGQ---------VRVSPACNA--SLPAQRWKWVSR
GG
Endo180
SKVFLIYNVGAQGCLETKDSL---------VRLAKGCNA--SSPAQQWKWVSR
XT Endo180 NAPFAIYSPEVGGCLAVRDSV---------VGLQWSCND--SSLDQQWLWVSR
TR Endo180 DVAFF--HEGARGCLGVRDHS---------LILSPSCED----INQRWKWVTR
HS
DEC205 NDPFTIVHENTGKCIQPLSDW----------VVAQDCSG---TNNMLWKWVSQ
MM
DEC205
NDPFTIVHENTGKCIQPLSDW----------VVAQDCSG---TNNMLWKWVSQ
GG
DEC205 SGAFTIRHDTLNKCIQVKNSR----------IVVDDCKE---TSEALWKWVSQ
XT
DEC205a ---FTILHEQSRKCLQYDNSR----------ISTANCSE--ENEALLWKWVSS
XT
DEC205b KYVFAIESRNLSKCIAVDSGR----------LSLQDCGT--LSRNMLWKWVSN
TR
DEC205 KDAFTIQHSDTNKCLGTGSTG---------ALTVAPCEP--DSRSQQWKWGLG
HS
PLA2R
KGIFVIQSESLKKCIQAGKSV---------LTLGRTGSK-QANKHMLWKWVSN
MM
PLA2R KGIFIIQSESLKTCIQAGKSV---------LTL-ENC-K-QPNEHMLWKWVSD
BT
PLA2R KGIFIIQSENLEKCIQASKST---------LTL-ENC-K-PPNKYMLWKWVSN
GG PLA2R KGIFIIQSSGSNLCIKADTAG---------LVL-EDCS--QLSKHMLWKWVSN
TR PLA2R KGLFLLESEPLKRCITVDRSN---------LVL-GDCE--RPTRSMLWKWVSQ
HS MMR ---SQIMSVAFKLCLGVPSK------TDWVAITLYACDSK--SEFQKWECKND
MM MMR ---SQIMSVAFKLCLGVPSK------TDWASVTLYACDSK--SEYQKWECKND
BT MMR ---SQIMSVALKLCLGVPSK------TDWVPVTLYACDSR--SEFQKWECKND
GG MMR1 ---HQLMSVRLNLCLGVPLK------EDEVAITLFPCNQT--SELQWWECRNE
GG MMR2 ---HQLMSIAFKLCLGVPSK------KDWVPVTLYPCDKA--SELQRWECRNE
XT MMR ---HQLVNVGVKQCLGATAK------KDMAVVTTYSCDGT--SELQKWECKND
TR MMR ---YRVLSLKLQLCLGAESI------KDWVKVILFECDES--SQLQHWECKND
HS Endo180
---NRLFNLGTMQCLGTGWPGTNTT----ASLGMYECDRE--ALNLRWHCRTL
MM Endo180 ---NRLFNLGATQCLGTGWPVTNTT----VSLGMYECDRE--ALSLRWQCRTL
BT Endo180 ---NRLFNLGTMQCLGTGWPGTNTT----ASLGMYECDRE--ALSLRWNCRTL
GG Endo180 ---NRLFNVGAMQCLGVSWHGGNAT-AGLHPLATYECDRE--SVNMRWSCRGL
XT Endo180 ---RRLFNLGSLQCLWVPSLSNGTS----STISVLPCDHE--NFHTIRRCEAQ
TR Endo180 ---NRLFNLGSSLCLGMTT-ANLTSRGEKSSLGVYTCDREPPRAQWTWNCDQV
HS DEC205
---HRLFHLESQKCLGLDIT------KATDNLRMFSCDST---VMLWWKCE--SL
MM
DEC205 ---HRLFHLESQKCLGLDIT------KATDNLRMFSCDST---VMLWWKCEHHSL
GG DEC205 ---SRLFHLGTKQCLGLDIF-----TKLPSRLRMVDCNSD---LRLWWRCADG
XT DEC205a ---HRLFHLRSQMCLGINLA------SPQDPLKMVPCDSK---LMLWWRCHDG
XT DEC205b ---QGLFNLQSGSCLGLNVS------DQRQPLGMFECDSA--LHTLGWKCTND
TR DEC205 ---HRLFHVGSSRCLALDVQ--------SKTLFLAECGSA---ILLWWRCMDG
HS PLA2R
---HGLFNIGGSGCLGLNFS------APEQPLSLYECDST--LVSLRWRCNRK
MM PLA2R ---DHLFNVGGSGCLGLNIS------ALEQPLKLYECDST--LISLRWHCDRK
BT PLA2R ---HRLFNIGGSGCLGLNVS------SPEQPLSIYECDST--HVSLKWHCNKK
GG PLA2R ---RRLFNIGRSSCLGLNIS------RPEQPLTMLECDSN--RYSLWWNCDGR
TR PLA2R ---HRLFNLGTSTCLGLNLS------NKTQPLGTFRCDTT--LSVLWWRCSGK
HS MMR
TLLGIKGE--DLFFNYGNRQEK-------NIMLYKGSGLW---SRWKIYGT-TDNLCSRG
MM MMR
TLFGIKGT--ELYFNYGNRQEK-------NIKLYKGSGLW---SRWKVYGT-TDDLCSRG
BT MMR
TLLGIKGE--DLFFNYGNRQEK-------NIMLYKGSGLW---SRWKIYGT-TDDLCSRG
GG
MMR1
SLLAIQGP--GKEEHDNVVLKRL-----------------SPKNNWKIYGA-MDVLCSQR
GG
MMR2
TLFAIQGE--DLFFNYGNRQER-------NIMLYKGSGLW---SRWKVYGT-TDDLCSRG
XT MMR
TLFGIQGD--TLHLNYGNVQHK--------VILYKGTGLW---SRWKVYGT-TDDLCTKA
TR MMR
TLFGLKEN--DLHLNWGNFNER-------NIMIYKGSGLW---SRWRIYGT-QNDLCSKG
HS Endo180
GDQLSLLL--GARTSNISK----------PGTLERGDQTRS--GQWRIYGS-EEDLCALP
MM Endo180
GDQLSLLL--GARASNASK----------PGTLERGDQTRS--GHWNIYGS-EEDLCARP
BT Endo180 GDQLSLLL--GGRVGNTSK----------AGSPERGDQTRS--GQWRIYGS-DEDLCARP
GG Endo180 GEQLSQHL--GARPANTSL--------------DRGDQARS--SQWRTYGT-EEDLCSVP
XT Endo180 LEQLSNAL-FPQTTNTTSLQEPPAKSAIQWLINGTNRS-ICSAVFWDIYTIQGNSNGRPCAIP
TR Endo180 LDNLNNYLPIPSLWNSSSL-PTPYSPFLKWTLHGGLRD-LCSKPYREIYTIQGNSHGHPCYFP
HS DEC205
YTAAQYRL--ALKDGYAV------------ANTNTS-------DVWKKGGS-EENLCDQP
MM DEC205
YTAAQYRL--ALKDGYAV------------ANTNTS-------DVWKKGGS-EENLCAQP
GG DEC205 SVVGASQYKVTVRSAYVT------------ASINAS-------DQWRSNNS-SADICQYP
XT DEC205a SIYGASQYRLREKDGAVT------------ASFSSN-------DTWIRDNT-PESICDLP
XT DEC205b ILTGADHYMLAAEGTTMV------------ASKLQY-------HKWKRHMSQDESFCEHH
TR DEC205 AIYTVYEMALVVNNGTLA------------AKRDAV-------DTWVRGGS-QDNICQKP
HS PLA2R
MITGPLQY--SVQVAHDN---------TVVASRKYI-------HKWISYGSGGGDICEYL
MM PLA2R
MIEGPLQY--KVQVKSDN---------TVVA-RKQI-------HRWIAYTSSGGDICEHP
BT PLA2R TITGPLQY--LVQVKQDN---------TLVASRKYL-------HKWVSYMSGGGGICDYL
GG PLA2R ALVGVSEY--RLAVENSK---------RIVAKKKSD-------YQWIQYMSYDEDLCEHP
TR PLA2R ILQGASQW--KVTVTGRL----------VVVKRNAH-------HLWKRYNTDREGPCSRP
Plant toxins,
bacterial hydrolases, eukaryotic GalNAc transferases
S1
S2 S3
S4
Ricin 1
CMDPEPIVRIVGRNGLCVDVRDGRFHN----------GNAIQLWPCKS---NTDANQLWTLKRD
Ricin
2
--TQPFVTTIVGLYGLCLQANSG----------------QVWIEDCSSEKAEQQWALYADGSI-
Xylanase
--PADGGQIKGVGSGRCLDVPASTSDG-----------TQLQLWDCHS-----GTNQQWAATDA
Arabinosidase ---AGSGALRGAGSNRCLDVLGGSQDDG----------ALLQLYDCWG-----GTNQQWTSTDT
Protease
TSTDVTTSYVQGYQNNCIDVPNSDFTDG----------KQLQVWNCNG------TNAQKVSFHP
Glucanase
------TGALRIGSTLCLDVPWADPTDT----------NQVQLATCSG------NAAQQWTRGT
HS
GALNT RHYFSLGEIRNVETNQCLDNMARKEN------------EKVGIFNCHG----MGGNQVFSYTAN
DM
GALNT3 SKAEELMALIDLERDKCLRPLKEDVPRSSL--------SAVTVGDCTS---HAQSMDMFVITPK
DM
GALNT6 PSYAMGALQNVGNQNLCLDTLGRKKH------------NKMGMYACADNIKTPQRTQFWELSWK
DM
GALNT35 RNYVDTFQLRLTGTELCAAVVAPKVKGFWKKG------SSLQLQTCRR-----TPNQLWYETEK
DM
GALNT5 LDYYYLGEIRNAETETCLDTMGRKYN------------EKVGISYCHG----LGGNQVFAYTKR
DM
GALNT1 KDVQGWGKVHAVNSNICLDDLLQNNEKP----------YNAGLYPCGK---VLQKSQLFSFTNT
DM
GALNT7 PANLHWGELRSVASDGCLDSMGHQPP------------AIMGLTYCHG----GGNNQLVRLNAA
DM
GALNT8 -AEYASGVLQISSPKLCLDRKDPSH-------------GQPKLAPCSSDHVFPSPEQYWSLTNH
DM
GALNT2 PDPQEVGQFRQ-DSTECLDTMGHLID------------GTVGIFPCHN----TGGNQEWAFTKR
DM
GALNT11 -------------PHFCLSIKGG----------------FPVIRKCHS-----TNFEDWTLTSR
DM
GALNT13 --DELSATGTLRNEDRCVHARQKDS--------------QPILASCYL-----SDITQWSMLRQ
DM
GALNT10 PLVFSGVIESVAFPGFCVDSLNCRHT------------KPVVLARCTGHNSMPGEHQNWSLTQD
DM
GALNT4 PSYAAGIIQNVANPVYCLDNMGKSTEE------------AVGMFSCADNRTHPQPNQFWELSIF
DM
GALNT9 SVAHGEIRNLGYGGRTCLDAPAGKKHQKK----------AVGTYPCHR----QGGNQYWMLSKA
DM
GALNT12 TDYASGHVKTLEFPKKCLTINAKS--------------QNLFLERCST----NNTLQNWTLTYV
CE
GALNT3
ADFRSLGAIVNRFTEKCVDTNGKKDGQ------------APGIQACHG----AGGNQAWSLTGK
CE
GALNT4
PRKTPGKSFQMKIGNLCLDSMARKESE------------APGLFGCHG----TGGNQEWVFDQL
CE
GALNT5a SVAKGEVRNSAVQPARCLDCMVGRHEKN----------RPVGTYQCHG----QGGNQYWMLSKD
CE
b SVAKGEMRNAGGKNRQCIDYKPSGG-------------KTVGMYQCHN----QGGNQYWMLSKD
CE
c
SVAKGELRNA--QTSQCLDSAVGEEVEN----------KAITPYPCHE----QGGNQYWMLSKD
CE
GALNT6a
PLDRFGRMTSSSNSSVCLAWTLRSSG-----------IKTASTADCLKI---FHKTQLWLYTGD
CE
b
--TPLDRFGRMSNSNYCTAFRPGDTGPKN---------HRLLGSPCTMG---FDLWQLWLYTGD
CE
GALNT7
PPNDVWGEARNPATGKCLDRMGGIPG-------------PMGATGCHG----YGGNQLIRLNVQ
CE
GALNT9
VVAYGALHTVVSGTRMCTDTLQRDEKMS----------QLLGVFHCQGK---GSSPQLMSLSKE
CE
GALNT10 PKASAEGEIRNVGTNFCIDTQFKEQNQ------------RFGLRKCTSDDKDGGGEQDLRLTRW
CE
GALNT11
LVAGKKYLIKMANGTHCLSAENSQGRIANG--------NRVEMRKCNH----MERMQQWKYSST
S5
S6
S7
S8
Ricin 1
---NTIRSNG--KCLTTYGY------------SPGVYVMIYDCNTAATT--DATRWQIWDNG
Ricin 2
---RPQQNRD--NCLTSDSN------------IRETVVKILSCGPAS----SGQRWMFKNDG
Xylanase
--GELRVYGD--KCLDAAGT------------SNGSKVQIYSCWGG-----DNQKWRLNSDG
Arabinosidase
--GRLTVYGD--KCLDVHAT------------APGTRVQIWSCSGG-----RNQQWRVNSDG
Protease
--DGTLRING--KCLDARWA------------WTHNGVQLMNCNGH-----IAQKFTLNGAG
Glucanase
--DGTVRALG--KCLDVSGT------------ADGTAVWIYTCNGT-----GAQKWTYDSAT
HS GALNT ---KEIRTDD--LCLDVSKL--------------NGPVTMLKCHHLK----GNQLWEYDPVK
DM GALNT3 --GQIMTNDN--VCLTYRQQKLGVIKMLKNRNATTSNVMLAQCASD-----SSQLWTYDMDT
DM GALNT6 R-DLRLRRKK--ECLDVQIW------------DANAPVWLWDCHSQG----GNQYWYYDYRH
DM GALNT35 --AEIVLDKL--LCLEASGD---------------AQVTVNKCHEML----GDQQWRHTRNA
DM GALNT5 ---QQIMSDD--LCLDASSS--------------NGPVNMVRCHNMG----GNQEWVYDAEE
DM GALNT1 ---NVLRNEL--SCATVQHS-----------ESPPYRVVMVPCMENDE---FNEQWRYEHQ-
DM GALNT7 ---GQLGVGE--RCVEADRQ----------------GIKLAVCRLGT----VDGPWQYNEHT
DM GALNT8 ---RELRSGF--YCLEVRNH--------------GVNVHIYQCHGQS----GNQFWSFDSKT
DM GALNT2 ---GEIKHDD--LCLTLVTF------------ARGSQVVLKACDDS-----ENQRWIMREG-
DM GALNT11 ---CQLKHGN--MCLDVDYK---------------NNVRATKCTKKL----SKNPWHYNYQH
DM GALNT13 -SGQLSTHRE--LCLAVGFG---------------MRIALEPCGRNETVR-RSQRWVRLGT-
DM GALNT10 HEIQLTNSKD--DCLEAQGL-------------RSKSVWLFRCHKNG----GNQYWYYNHRH
DM GALNT4 RDLRMKGFDS--VCLDVHEG------------PPNATVWMWSCHSQG----GNQFWYYDRQT
DM GALNT9
---GEIRRDD--SCLDYAGK----------------DVTLFGCHGGK----GNQFWTYRENT
DM GALNT12
----KDLRVAGNICAEVRPN---------------LRLGYSFCHSLG----GRQSWHYDS
CE
GALNT3
---GEIRSDD--LCLSSGHV-----------YQIGSELKLERCSVSKIN--VKHVFVFDDQA
CE
GALNT4
TKTFKNAISQ--LCLDFSSN------------TENKTVTMVKCENL-----RPDTMVVEKN-
CE
GALNT5
---GEIRRDE--SCVDYAGS----------------DVMVFPCHGMK----GNQEWRYNHDT
CE
GALNT6
--RRIRTDEH--LCLSVVQL---------LHTTSDWKIQLKECAGF-----DTEYWDFKPKI
CE
GALNT7
---GQMAQGE--WCLTANGI----------------RIQANHCVKGT----VNGFWSYDRKT
CE
GALNT9
---GNLRREN--TCASEENG----------------NIRMKTCSKKAQ---FNERWAYENKM
CE
GALNT10
H-DIRPKGRK--ICFDCSTS------------VDKAPVILFDCHSMK----GNQLFKYRVAQ
CE
GALNT11
NELRPMGSSR--MCLDSLRG-----------------ISVILCHNQG----AHQMWQVSNAG
S9
S10 S11
S12
Ricin 1
-TIINPR---SSLVLAATSGNSGTT------------LTVQTNIYA-----VSQGWLPTN
Ricin 2
-TILNLY---SGLVLDVRASDPSLKQ-----------IILYPLHGD-----PNQIWLPL
Xylanase
-SVVGVQ---SGLCLDAVGNGTANG----------TLIQLYTCSNG-----SNQRWTRT
Arabinosidase
-TVVGVE---SGLCLEAAGAGTPNG----------TAVQLWTCNGG-----GNQKWTGL
Protease
-DLVNVH---ANKCVDVKDWGGQGG-----------KLQLWECSGG-----ANQKWWRR
Glucanase -KALRNPQ--SGKCLDAQGGRDG------------QKVQLWTCNQT-----EAQRWTL
HS GALNT LTLQHVN---SNQCLDKATEED------------SQVPSIRDCNGS-----RSQQWLLRN
DM GALNT3 QQISHRD---TKLCLTLKAATN------SRLQKVEKVVLSMECDFKD----ITQKWGFIP
DM GALNT6 KQLKHGTE--GRRCLELLPFS--------------QEVVANKCDTDN----RFQQWNFGS
DM GALNT35
NSPVYNMA--KGTCLRAAAPT------------TGALISLDLCSKSNG---AGGSWDIVQ
DM GALNT5 KWIRHTN---TGQCLQRATRDD------------ANTPLLRPCSYG-----KGQQWLMES
DM GALNT1 -HIIHSN---TGMCLDHQGLKS------------LDDAQVAPCDPHS----ESQRWTIEH
DM GALNT7 KHLMHRV---HKKCMALHP--------------ATQQLSLGHCDVND----SYQQWWFKE
DM GALNT8 HQVISGQQQNFRHCLEAQP--------------ELNAVTSSVCDPKN----HKQQWKFGY
DM GALNT2 -GLVRHYK--INVCLDSRDQS-------------QQGVSAQHCNSAL----GTQRWSFGK
DM GALNT11 SSFVSNG----NKCLQIDVN--------------KVGLILSACDSDV----TEQRWMFTK
DM GALNT13 -HLLHAE---SHLCLDNPL---------------KDRLEMSTCRSHA----VSQSFQFAL
DM GALNT10 RWIQQGQI--WVWCLEAQLASG---------HKVGKVLANKICDKNQ----LEQQWLLLC
DM GALNT4 QRLVHGEN--NKRCLEGFVENG------------IAKVVANSCENGN----DRQRWEFGF
DM GALNT9 KQLHHGT---SGKCLAISESKD--------------KLLMEECSASL----SRQQWTLEN
DM GALNT12
VSNQLMSN---TKCLEFTD---------------ELNIFLAICDAAN----GKQRWILDN
CE
GALNT3 GTLLHKK---TGKCVTGAD----------------QRVTLDECGLGR----KDQMWQLEG
CE
GALNT4 -GWLTQG----GKCLTVNQGSG-----------GDWLIYGAHCELNN----GAQRWIFEK
CE
GALNT5 GRLQHAV---SQKCLGMTKD--------------GAKLEMVACQYDD----PYQHWKFKE
CE GALNT6 GRFQNRK---TGLCLASPDI-------FDPTKDEFNPPIVQKCRSSN----DRQNWTITE
CE
GALNT7 KQIIHSQ---KRQCITVSES--------------GSEVTLQTCTEDN----ERQKFVWKE
CE
GALNT9 IRNLKS-----GKCMSTANLK------------PGDNAIVVECDEKD----EHQKWNFID
CE
GALNT10 KQIYHPI---SGQCLTADE-NG------------KGFLHMKKCDSSS----DLQKWAWQT
CE
GALNT11 KLYSRSV----NKCATGSND-------------VSALSTLKFCSLA-------NSFQFVE
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- This page last updated:
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Tuesday, 19 September 2006
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Animal lectins
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- Kurt Drickamer
- Division of Molecular Biosciences
- Faculty of Natural Sciences
- Imperial College London
-
- Email:
k.drickamer@imperial.ac.uk
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