Group XIII - IDD

Joint human/mouse sequence alignment
Human sequence alignment
Introduction
Mammalian proteins containing CTLDs
Introduction  Domain organization  Sequence alignments  Human database  Mouse database  Joint human/mouse database

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SIGNAL SEQUENCE and LDL-RECEPTOR CLASS A DOMAIN
 
Human IDD   MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPE
Mouse IDD   MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACHGGTIQCIPLPWQCDGWPTCEDKSDEADCP-

SIGNAL SEQUENCE

 

SPACER 

Human IDD   VTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFL
Mouse IDD   VTGEARP-YGKETVDLRQGRARGGDPTHFHTVNVAQPVRFSSFL

 

CTLD
 
Human IDD   GKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKDQRKLWVGYQYVIT
Mouse IDD   GKCPSGWHHYEGTASCYRVYLSGENYWDAAQTCQRVNGSLATFSTDQELRFVLAQEWDQPERSFGWKDQRKLWVGYQYVIT
 
Human IDD   GRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFHFPTLRHHDLHSWHAESCYEKSSFLCKRSQ
Mouse IDD   GRNHSLEGRWEVAFKGSPEVFLPPDPIFASAMSENDNVFCAQLQCFHFPTLRHHDLHSWHAESCSEKSSFLCKRSQ

CONSERVED CORE RESIDUES

 

VON WILLEBRAND FACTOR C DOMAIN

Human IDD   TCVDIKDNVVDEGFYFTPKGDDPCLSCTCHGGEPEMCVAALCERPQGCQQYRKDPKECCKFMCL
Mouse IDD   TCVDIKDNVVDEGFYFTPKGDDPCLSCTCHRGEPEMCVAALCERPQGCQQYRKDPKECCKFMCL

 

TRANSMEMBRANE REGION and CYTOPLASMIC DOMAIN
 
Human IDD   DPDGNSLFDSMASGMRLVVSCISSFLILSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
Mouse IDD   DPDGSSLFDSMASGMRLVVSCISSFLILSLLLFMVHRLAQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
 
Human IDD   GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAPGDGGSEGALLRRLEQPLPTAGASLADL
Mouse IDD   GGTFHFHDPPPPYTAYKYPDMDQPDDPPPPYEASINPDSVFYDPADDDAFEPVEASLPAPRDGGIEGALPRHLDQPLPPAETSLADL
 
Human IDD   EDSADSSSALLVPPDPAQSGSTPAAEALPGGGRHSRSSLNTVV 
Mouse IDD   EDSTDSSSALLVPPDPAQSGSTPATEAPPGGGRLPRASLNTVV

TRANSMEMBRANE SEQUENCE 

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This page last updated:
Thursday, 09 March 2006
Animal lectins home
Contact information: This site is supported by:
 
Kurt Drickamer
Division of Molecular Biosciences
Faculty of Natural Sciences
Imperial College London
 
Email: k.drickamer@imperial.ac.uk