Imperial College London
Alternate

Dr Chris Wymant

Faculty of Medicine, School of Public Health

Honorary Research Associate
 
 
 
//

Contact

 

+44 (0)20 7594 3217c.wymant

 
 
//

Location

 

Medical SchoolSt Mary's Campus

//

Summary

 

Publications

Citation

BibTex format

@article{Blanquart:2017:10.1371/journal.pbio.2001855,
author = {Blanquart, F and Wymant, C and Cornelissen, M and Gall, A and Bakker, M and Bezemer, D and Hall, M and Hillebregt, M and Ong, SH and Albert, J and Bannert, N and Fellay, J and Fransen, K and Gourlay, AJ and Grabowski, MK and Gunsenheimer-Bartmeyer, B and Guenthard, HF and Kivela, P and Kouyos, R and Laeyendecker, O and Liitsola, K and Meyer, L and Porter, K and Ristola, M and van, Sighem A and Vanham, G and Berkhout, B and Kellam, P and Reiss, P and Fraser, C},
doi = {10.1371/journal.pbio.2001855},
journal = {PLoS Biology},
title = {Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe},
url = {http://dx.doi.org/10.1371/journal.pbio.2001855},
volume = {15},
year = {2017}
}
Download

RIS format (EndNote, RefMan)

TY  - JOUR
AB  - HIV-1 set-point viral load—the approximately stable value of viraemia in the first years of chronic infection—is a strong predictor of clinical outcome and is highly variable across infected individuals. To better understand HIV-1 pathogenesis and the evolution of the viral population, we must quantify the heritability of set-point viral load, which is the fraction of variation in this phenotype attributable to viral genetic variation. However, current estimates of heritability vary widely, from 6% to 59%. Here we used a dataset of 2,028 seroconverters infected between 1985 and 2013 from 5 European countries (Belgium, Switzerland, France, the Netherlands and the United Kingdom) and estimated the heritability of set-point viral load at 31% (CI 15%–43%). Specifically, heritability was measured using models of character evolution describing how viral load evolves on the phylogeny of whole-genome viral sequences. In contrast to previous studies, (i) we measured viral loads using standardized assays on a sample collected in a strict time window of 6 to 24 months after infection, from which the viral genome was also sequenced; (ii) we compared 2 models of character evolution, the classical “Brownian motion” model and another model (“Ornstein–Uhlenbeck”) that includes stabilising selection on viral load; (iii) we controlled for covariates, including age and sex, which may inflate estimates of heritability; and (iv) we developed a goodness of fit test based on the correlation of viral loads in cherries of the phylogenetic tree, showing that both models of character evolution fit the data well. An overall heritability of 31% (CI 15%–43%) is consistent with other studies based on regression of viral load in donor–recipient pairs. Thus, about a third of variation in HIV-1 virulence is attributable to viral genetic variation.
AU  - Blanquart,F
AU  - Wymant,C
AU  - Cornelissen,M
AU  - Gall,A
AU  - Bakker,M
AU  - Bezemer,D
AU  - Hall,M
AU  - Hillebregt,M
AU  - Ong,SH
AU  - Albert,J
AU  - Bannert,N
AU  - Fellay,J
AU  - Fransen,K
AU  - Gourlay,AJ
AU  - Grabowski,MK
AU  - Gunsenheimer-Bartmeyer,B
AU  - Guenthard,HF
AU  - Kivela,P
AU  - Kouyos,R
AU  - Laeyendecker,O
AU  - Liitsola,K
AU  - Meyer,L
AU  - Porter,K
AU  - Ristola,M
AU  - van,Sighem A
AU  - Vanham,G
AU  - Berkhout,B
AU  - Kellam,P
AU  - Reiss,P
AU  - Fraser,C
DO  - 10.1371/journal.pbio.2001855
PY  - 2017///
SN  - 1544-9173
TI  - Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe
T2  - PLoS Biology
UR  - http://dx.doi.org/10.1371/journal.pbio.2001855
UR  - http://hdl.handle.net/10044/1/56788
VL  - 15
ER  -
Download