Summary
Software
famCNV - copy number variant association for quantitative traits in families
The program uses intensity signals (aCGH and SNP genotyping data) which act as proxies for genomic copy number to carry out association with quantitative traits in family settings.
- Download the program famCNV
- source files
Documentation famCNV manual and example file famCNV example files
Aranea - Differential network analysis for high-throughput ‘omics data
Aranea is an open-source multi-threaded package for the differential network analysis of large datasets.
- Download the program Aranea
- Documentation Aranea_Doc and example files Aranea Examples
Publications
Journals
Visconti A, Rossi N, Deris H, et al. , 2023, Total serum N-glycans associate with response to immune checkpoint inhibition therapy and survival in patients with advanced melanoma, Bmc Cancer, Vol:23
Valles-Colomer M, Blanco-Míguez A, Manghi P, et al. , 2023, The person-to-person transmission landscape of the gut and oral microbiomes., Nature, Vol:614, Pages:125-135
Zhang X, Adebayo AS, Wang D, et al. , 2022, PPI-Induced Changes in Plasma Metabolite Levels Influence Total Hip Bone Mineral Density in a UK Cohort, Journal of Bone and Mineral Research, ISSN:0884-0431
Surendran P, Stewart ID, Yeung VPWA, et al. , 2022, Rare and common genetic determinants of metabolic individuality and their effects on human health, Nature Medicine, Vol:28, ISSN:1078-8956, Pages:2321-2332
Coradduzza D, Solinas T, Balzano F, et al. , 2022, miRNAs as Molecular Biomarkers for Prostate Cancer, Journal of Molecular Diagnostics, Vol:24, ISSN:1525-1578, Pages:1171-1180