Summary
Selected Publications
Journal Articles
Liepe J, Sim A, Weavers H, et al., 2016, Accurate Reconstruction of Cell and Particle Tracks from 3D Live Imaging Data., Cell Systems, Vol:3, ISSN:2405-4720, Pages:102-107
Weavers H, Liepe J, Sim A, et al., 2016, Systems Analysis of the Dynamic Inflammatory Response to Tissue Damage Reveals Spatiotemporal Properties of the Wound Attractant Gradient, Current Biology, Vol:26, ISSN:1879-0445, Pages:1975-1989
Filippi S, Barnes CP, Kirk PDW, et al., 2016, Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling, Cellreports
MacLean AL, Filippi S, Stumpf MPH, 2014, The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemia, Proceedings of the National Academy of Sciences of the United States of America, Vol:111, ISSN:0027-8424, Pages:3883-3888
Liepe J, Kirk P, Filippi S, et al., 2014, A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation, Nature Protocols, Vol:9, ISSN:1754-2189, Pages:439-456
Kirk P, Thorne T, Stumpf MPH, 2013, Model selection in systems and synthetic biology, Current Opinion in Biotechnology, Vol:24, ISSN:0958-1669, Pages:767-774
Harrington HA, Feliu E, Wiuf C, et al., 2013, Cellular Compartments Cause Multistability and Allow Cells to Process More Information, Biophysical Journal, Vol:104, ISSN:0006-3495, Pages:1824-1831
Komorowski M, Miekisz J, Stumpf MPH, 2013, Decomposing Noise in Biochemical Signalling Systems Highlights the Role of Protein Degradation, Biophysical Journal, Vol:104, Pages:1783-1793
Thorne T, Fratta P, Hanna MG, et al., 2013, Graphical modelling of molecular networks underlying sporadic inclusion body myositis, Molecular Biosystems, Vol:9, ISSN:1742-206X, Pages:1736-1742
Liepe J, Filippi S, Komorowski ML, et al., 2013, Maximizing the Information Content of Experiments in Systems Biology, Plos Computational Biology
Harrington HA, Ho KL, Thorne T, et al., 2012, Parameter-free model discrimination criterion based on steady-state coplanarity, Proceedings of the National Academy of Sciences of the United States of America, Vol:109, ISSN:0027-8424, Pages:15746-15751
Stumpf MPH, Porter MA, 2012, Critical Truths About Power Laws, Science, Vol:335, ISSN:0036-8075, Pages:665-666
Roy A, Cowan G, Mead AJ, et al., 2012, Perturbation of fetal liver hematopoietic stem and progenitor cell development by trisomy 21., Proceedings of the National Academy of Sciences
Silk D, Kirk PDW, Barnes CP, et al., 2011, Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes, Nature Communications, Vol:2, ISSN:2041-1723
Barnes CP, Silk D, Sheng X, et al., 2011, Bayesian design of synthetic biological systems, Proceedings of the National Academy of Sciences of the United States of America, Vol:108, ISSN:0027-8424, Pages:15190-15195
Komorowski M, Costa MJ, Rand DA, et al., 2011, Sensitivity, robustness, and identifiability in stochastic chemical kinetics models, Proceedings of the National Academy of Sciences of the United States of America, Vol:108, ISSN:0027-8424, Pages:8645-8650