Publications
47 results found
Gifford RJ, Blomberg J, Coffin JM, et al., 2018, Nomenclature for endogenous retrovirus (ERV) loci, RETROVIROLOGY, Vol: 15, ISSN: 1742-4690
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- Citations: 69
Krupovic M, Blomberg J, Coffin JM, et al., 2018, Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses, JOURNAL OF VIROLOGY, Vol: 92, ISSN: 0022-538X
Lee A, Huntley D, Aiewsakun P, et al., 2014, Novel Denisovan and Neanderthal Retroviruses, Journal of Virology, Vol: 88, Pages: 12907-12909, ISSN: 1098-5514
Following the recent availability of high-coverage genomes for Denisovan and Neanderthal hominids, we conducted a screen for endogenized retroviruses, identifying six novel, previously unreported HERV-K(HML2) elements (HERV-K is human endogenous retrovirus K). These elements are absent from the human genome (hg38) and appear to be unique to archaic hominids. These findings provide further evidence supporting the recent activity of the HERV-K(HML2) group, which has been implicated in human disease. They will also provide insights into the evolution of archaic hominids.
Lee A, Nolan A, Watson J, et al., 2013, Identification of an ancient endogenous retrovirus, predating the divergence of the placental mammals, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 368, ISSN: 0962-8436
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- Citations: 35
Kanda RK, Tristem M, Coulson T, 2013, Exploring the effects of immunity and life history on the dynamics of an endogenous retrovirus, PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Vol: 368, ISSN: 0962-8436
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- Citations: 9
Nascimento FF, Gongora J, Tristem M, et al., 2011, Distinctive differences in long terminal repeat sequences between gamma 1 endogenous retroviruses of African and Eurasian suid species, INFECTION GENETICS AND EVOLUTION, Vol: 11, Pages: 686-693, ISSN: 1567-1348
Nascimento FF, Gongora J, Charleston M, et al., 2011, Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species, BMC EVOLUTIONARY BIOLOGY, Vol: 11, ISSN: 1471-2148
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- Citations: 9
Katzourakis A, Gifford RJ, Tristem M, et al., 2009, Macroevolution of Complex Retroviruses, SCIENCE, Vol: 325, Pages: 1512-1512, ISSN: 0036-8075
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- Citations: 126
Singh S, Bunker CB, Kaye S, et al., 2009, Expression of human endogenous retrovirus k (HERV-K) mRNA and production of putative viral particles by melanoma cell lines, 69th Annual Meeting of the Society-of-Investigative-Dermatology, Publisher: NATURE PUBLISHING GROUP, Pages: S136-S136, ISSN: 0022-202X
Belshaw R, Tristem M, 2009, Do humans have replication-competent endogenous retroviruses?, RETROVIROLOGY, Vol: 6, ISSN: 1742-4690
Katzourakis A, Gifford RJ, Tristem M, et al., 2009, Paleovirology reveals the macroevolution of complex retroviruses, RETROVIROLOGY, Vol: 6, ISSN: 1742-4690
Gifford RJ, Katzourakis A, Tristem M, et al., 2008, A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 105, Pages: 20362-20367, ISSN: 0027-8424
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- Citations: 151
Katzourakis A, Pereira V, Tristem M, 2007, Effects of recombination rate on human endogenous retrovirus fixation and persistence, JOURNAL OF VIROLOGY, Vol: 81, Pages: 10712-10717, ISSN: 0022-538X
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- Citations: 28
Belshaw R, Watson J, Katzourakis A, et al., 2007, Rate of recombinational deletion among human endogenous retroviruses, JOURNAL OF VIROLOGY, Vol: 81, Pages: 9437-9442, ISSN: 0022-538X
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- Citations: 86
Katzourakis A, Tristem M, Pybus OG, et al., 2007, Discovery and analysis of the first endogenous lentivirus, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 104, Pages: 6261-6265, ISSN: 0027-8424
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- Citations: 160
Belshaw R, Dawson ALA, Woolven-Allen J, et al., 2005, Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): Implications for present-day activity, JOURNAL OF VIROLOGY, Vol: 79, Pages: 12507-12514, ISSN: 0022-538X
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- Citations: 168
Gifford R, Kabat P, Martin J, et al., 2005, Evolution and distribution of class II-related endogenous retroviruses, JOURNAL OF VIROLOGY, Vol: 79, Pages: 6478-6486, ISSN: 0022-538X
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- Citations: 61
Belshaw R, Katzourakis A, Paces J, et al., 2005, High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection, MOLECULAR BIOLOGY AND EVOLUTION, Vol: 22, Pages: 814-817, ISSN: 0737-4038
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- Citations: 111
Belshaw R, Pereira V, Katzourakis A, et al., 2004, Long-term reinfection of the human genome by endogenous retroviruses, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 101, Pages: 4894-4899, ISSN: 0027-8424
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- Citations: 280
Kambol R, Kabat P, Tristem M, 2003, Complete nucleotide sequence of an endogenous retrovirus from the amphibian, <i>Xenopus laevis</i>, VIROLOGY, Vol: 311, Pages: 1-6, ISSN: 0042-6822
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- Citations: 21
Gifford R, Tristem M, 2003, The evolution, distribution and diversity of endogenous retroviruses., Virus Genes, Vol: 26, Pages: 291-315, ISSN: 0920-8569
The retroviral capacity for integration into the host genome can give rise to endogenous retroviruses (ERVs): retroviral sequences that are transmitted vertically as part of the host germ line, within which they may continue to replicate and evolve. ERVs represent both a unique archive of ancient viral sequence information and a dynamic component of host genomes. As such they hold great potential as informative markers for studies of both virus evolution and host genome evolution. Numerous novel ERVs have been described in recent years, particularly as genome sequencing projects have advanced. This review discusses the evolution of ERV lineages, considering the processes by which ERV distribution and diversity is generated. The diversity of ERVs isolated so far is summarised in terms of both their distribution across host taxa, and their relationships to recognised retroviral genera. Finally the relevance of ERVs to studies of genome evolution, host disease and viral ecology is considered, and recent findings discussed.
Gifford R, Tristem M, 2003, The evolution, distribution and diversity of endogenous retroviruses, VIRUS GENES, Vol: 26, Pages: 291-316, ISSN: 0920-8569
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- Citations: 273
Martin J, Kabat P, Herniou E, et al., 2002, Characterization and complete nucleotide sequence of an unusual reptilian retrovirus recovered from the order crocodylia, JOURNAL OF VIROLOGY, Vol: 76, Pages: 4651-4654, ISSN: 0022-538X
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- Citations: 11
Tristem M, 2000, Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the Human Genome Mapping Project database, JOURNAL OF VIROLOGY, Vol: 74, Pages: 3715-3730, ISSN: 0022-538X
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- Citations: 253
Cook JM, Martin J, Lewin A, et al., 2000, Systematic screening of <i>Anopheles</i> mosquito genomes yields evidence for a major clade of <i>Pao</i>-like retrotransposons, INSECT MOLECULAR BIOLOGY, Vol: 9, Pages: 109-117, ISSN: 0962-1075
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- Citations: 22
Miller K, Lynch C, Martin J, et al., 1999, Identification of multiple <i>gypsy</i> LTR-retrotransposon lineages in vertebrate genomes, JOURNAL OF MOLECULAR EVOLUTION, Vol: 49, Pages: 358-366, ISSN: 0022-2844
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- Citations: 47
Phanis CG, Miller DP, Cassar SC, et al., 1999, Identification and expression of two baculovirus <i>gp37</i> genes, JOURNAL OF GENERAL VIROLOGY, Vol: 80, Pages: 1823-1831, ISSN: 0022-1317
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- Citations: 27
Martin J, Herniou E, Cook J, et al., 1999, Interclass transmission and phyletic host tracking in murine leukemia virus-related retroviruses, JOURNAL OF VIROLOGY, Vol: 73, Pages: 2442-2449, ISSN: 0022-538X
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- Citations: 101
Kang W, Tristem M, Maeda S, et al., 1998, Identification and characterization of the <i>Cydia pomonella</i> granulovirus cathepsin and chitinase genes, JOURNAL OF GENERAL VIROLOGY, Vol: 79, Pages: 2283-2292, ISSN: 0022-1317
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- Citations: 58
Herniou E, Martin J, Miller K, et al., 1998, Retroviral diversity and distribution in vertebrates, JOURNAL OF VIROLOGY, Vol: 72, Pages: 5955-5966, ISSN: 0022-538X
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- Citations: 148
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