Imperial College London
Alternate

ProfessorTenFeizi

Faculty of Medicine, Department of Metabolism, Digestion and Reproduction

Professor and Director of the Glycosciences Laboratory
 
 
 
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Contact

 

+44 (0)20 7594 7207t.feizi

 
 
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Location

 

E518Burlington DanesHammersmith Campus

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Summary

 

Publications

Citation

BibTex format

@article{Akune:2022:glycob/cwac018,
author = {Akune, Y and Arpinar, S and Silva, LM and Palma, AS and Liu, Y and Ranzinger, R and Feizi, T},
doi = {glycob/cwac018},
journal = {Glycobiology},
pages = {1031--1031},
title = {CarbArrayART-An update on the software tool for carbohydrate microarray data, storage, processing, presentation and reporting},
url = {http://dx.doi.org/10.1093/glycob/cwac018},
volume = {30},
year = {2022}
}
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RIS format (EndNote, RefMan)

TY  - JOUR
AB  - Glycan microarrays are essential tools in glycobiology and are being widely used for assignment of glycan ligands in diverse glycan recognition systems. We have developed a new software, called Carbohydrate microArray Analysis and Reporting Tool (CarbArrayART), to address the need for a distributable application for glycan microarray data management. The main features of CarbArrayART include: (i) Storage of quantified array data from different array layouts with scan data and array-specific metadata, such as lists of arrayed glycans, array geometry, information on glycan-binding samples, and experimental protocols. (ii) Presentation of microarray data as charts, tables, and heatmaps derived from the average fluorescence intensity values that are calculated based on the imaging scan data and array geometry, as well as filtering and sorting functions according to monosaccharide content and glycan sequences. (iii) Data export for reporting in Word, PDF, and Excel formats, together with metadata that are compliant with the guidelines of MIRAGE (Minimum Information Required for A Glycomics Experiment). CarbArrayART is designed for routine use in recording, storage, and management of any slide-based glycan microarray experiment. In conjunction with the MIRAGE guidelines, CarbArrayART addresses issues that are critical for glycobiology, namely, clarity of data for evaluation of reproducibility and validity.
AU  - Akune,Y
AU  - Arpinar,S
AU  - Silva,LM
AU  - Palma,AS
AU  - Liu,Y
AU  - Ranzinger,R
AU  - Feizi,T
DO  - glycob/cwac018
EP  - 1031
PY  - 2022///
SN  - 0959-6658
SP  - 1031
TI  - CarbArrayART-An update on the software tool for carbohydrate microarray data, storage, processing, presentation and reporting
T2  - Glycobiology
UR  - http://dx.doi.org/10.1093/glycob/cwac018
UR  - http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000606577100029&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
UR  - https://academic.oup.com/glycob/advance-article/doi/10.1093/glycob/cwac018/6555547
UR  - http://hdl.handle.net/10044/1/97395
VL  - 30
ER  -
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