Imperial College London

DrThomasOuldridge

Faculty of EngineeringDepartment of Bioengineering

Reader in Biomolecular Systems
 
 
 
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Contact

 

t.ouldridge Website CV

 
 
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Location

 

4.04Royal School of MinesSouth Kensington Campus

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Summary

 

Publications

Citation

BibTex format

@article{Deshpande:2017:10.1049/enb.2017.0017,
author = {Deshpande, A and Ouldridge, TE},
doi = {10.1049/enb.2017.0017},
journal = {Engineering Biology},
pages = {86--99},
title = {High rates of fuel consumption are not required by insulating motifs to suppress retroactivity in biochemical circuits},
url = {http://dx.doi.org/10.1049/enb.2017.0017},
volume = {1},
year = {2017}
}

RIS format (EndNote, RefMan)

TY  - JOUR
AB - Retroactivity arises when the coupling of a molecular network $\mathcal{U}$to a downstream network $\mathcal{D}$ results in signal propagation back from$\mathcal{D}$ to $\mathcal{U}$. The phenomenon represents a breakdown inmodularity of biochemical circuits and hampers the rational design of complexfunctional networks. Considering simple models of signal-transductionarchitectures, we demonstrate the strong dependence of retroactivity on theproperties of the upstream system, and explore the cost and efficacy offuel-consuming insulating motifs that can mitigate retroactive effects. We findthat simple insulating motifs can suppress retroactivity at a low fuel cost bycoupling only weakly to the upstream system $\mathcal{U}$. However, this designapproach reduces the signalling network's robustness to perturbations from leakreactions, and potentially compromises its ability to respond torapidly-varying signals.
AU - Deshpande,A
AU - Ouldridge,TE
DO - 10.1049/enb.2017.0017
EP - 99
PY - 2017///
SN - 2398-6182
SP - 86
TI - High rates of fuel consumption are not required by insulating motifs to suppress retroactivity in biochemical circuits
T2 - Engineering Biology
UR - http://dx.doi.org/10.1049/enb.2017.0017
UR - http://hdl.handle.net/10044/1/54446
VL - 1
ER -