Summary
Dr. Johannes C. Paetzold is a Postdoctoral researcher in computer science at Imperial College London. He is also the Artificial Intelligence Team Leader at the Institute for Tissue Engineering and Regenerative Medicine at the Helmholtz Zentrum München. His main interest is the development of deep learning and graph learning methods for large biological networks such as vessels and neurons. Most of the applications he works on concern medical imaging and microscopy with some extensions to remote sensing. Further theoretical research interests include topology-aware machine learning and generative models.
Publications
Journals
Kolabas ZI, Kuemmerle LB, Perneczky R, et al.Kolabas ZI, Kuemmerle LB, Perneczky R, Förstera B, Ulukaya S, Ali M, Kapoor S, Bartos LM, Büttner M, Caliskan OS, Rong Z, Mai H, Höher L, Jeridi D, Molbay M, Khalin I, Deligiannis IK, Negwer M, Roberts K, Simats A, Carofiglio O, Todorov MI, Horvath I, Ozturk F, Hummel S, Biechele G, Zatcepin A, Unterrainer M, Gnörich J, Roodselaar J, Shrouder J, Khosravani P, Tast B, Richter L, Díaz-Marugán L, Kaltenecker D, Lux L, Chen Y, Zhao S, Rauchmann B-S, Sterr M, Kunze I, Stanic K, Kan VWY, Besson-Girard S, Katzdobler S, Palleis C, Schädler J, Paetzold JC, Liebscher S, Hauser AE, Gokce O, Lickert H, Steinke H, Benakis C, Braun C, Martinez-Jimenez CP, Buerger K, Albert NL, Höglinger G, Levin J, Haass C, Kopczak A, Dichgans M, Havla J, Kümpfel T, Kerschensteiner M, Schifferer M, Simons M, Liesz A, Krahmer N, Bayraktar OA, Franzmeier N, Plesnila N, Erener S, Puelles VG, Delbridge C, Bhatia HS, Hellal F, Elsner M, Bechmann I, Ondruschka B, Brendel M, Theis FJ, Erturk A close, 2023, Distinct molecular profiles of skull bone marrow in health and neurological disorders., Cell, Vol:186, Pages:3706-3725.e29
Mai H, Luo J, Hoeher L, et al.Mai H, Luo J, Hoeher L, Al-Maskari R, Horvath I, Chen Y, Kofler F, Piraud M, Paetzold JCC, Modamio J, Todorov M, Elsner M, Hellal F, Ertuerk A close, 2023, Whole-body cellular mapping in mouse using standard IgG antibodies, Nature Biotechnology, ISSN:1087-0156
Mueller TT, Paetzold JC, Prabhakar C, et al.Mueller TT, Paetzold JC, Prabhakar C, Usynin D, Rueckert D, Kaissis G close, 2023, Differentially Private Graph Neural Networks for Whole-Graph Classification, Ieee Transactions on Pattern Analysis and Machine Intelligence, Vol:45, ISSN:0162-8828, Pages:7308-7318
Bilic P, Christ P, Li HB, et al.Bilic P, Christ P, Li HB, Vorontsov E, Ben-Cohen A, Kaissis G, Szeskin A, Jacobs C, Mamani GEH, Chartrand G, Lohoefer F, Holch JW, Sommer W, Hofmann F, Hostettler A, Lev-Cohain N, Drozdzal M, Amitai MM, Vivanti R, Sosna J, Ezhov I, Sekuboyina A, Navarro F, Kofler F, Paetzold JC, Shit S, Hu X, Lipkova J, Rempfler M, Piraud M, Kirschke J, Wiestler B, Zhang Z, Huelsemeyer C, Beetz M, Ettlinger F, Antonelli M, Bae W, Bellver M, Bi L, Chen H, Chlebus G, Dam EB, Dou Q, Fu C-W, Georgescu B, Giro-I-Nieto X, Gruen F, Han X, Heng P-A, Hesser J, Moltz JH, Igel C, Isensee F, Jaeger P, Jia F, Kaluva KC, Khened M, Kim I, Kim J-H, Kim S, Kohl S, Konopczynski T, Kori A, Krishnamurthi G, Li F, Li H, Li J, Li X, Lowengrub J, Ma J, Maier-Hein K, Maninis K-K, Meine H, Merhof D, Pai A, Perslev M, Petersen J, Pont-Tuset J, Qi J, Qi X, Rippel O, Roth K, Sarasua I, Schenk A, Shen Z, Torres J, Wachinger C, Wang C, Weninger L, Wu J, Xu D, Yang X, Yu SC-H, Yuan Y, Yue M, Zhang L, Cardoso J, Bakas S, Braren R, Heinemann V, Pal C, Tang A, Kadoury S, Soler L, van Ginneken B, Greenspan H, Joskowicz L, Menze B close, 2023, The Liver Tumor Segmentation Benchmark (LiTS), Medical Image Analysis, Vol:84, ISSN:1361-8415
Conference
Holland R, Leingang O, Holmes C, et al.Holland R, Leingang O, Holmes C, Anders P, Kaye R, Riedl S, Paetzold JC, Ezhov I, Bogunović H, Schmidt-Erfurth U, Scholl HPN, Sivaprasad S, Lotery AJ, Rueckert D, Menten MJ close, 2023, Clustering Disease Trajectories in Contrastive Feature Space for Biomarker Proposal in Age-Related Macular Degeneration, Pages:724-734, ISSN:0302-9743
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