Imperial College London
Alternate

ProfessorMichaelSternberg

Faculty of Natural Sciences, Department of Life Sciences

Director, Systems Biology and Bioinformatics Centre
 
 
 
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Contact

 

+44 (0)20 7594 5212m.sternberg Website

 
 
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Location

 

306Sir Ernst Chain BuildingSouth Kensington Campus

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Summary

 

Publications

Citation

BibTex format

@article{PDBe-KB:2020:nar/gkz853,
author = {PDBe-KB, consortium},
doi = {nar/gkz853},
journal = {Nucleic Acids Research},
pages = {D344--D353},
title = {PDBe-KB: a community-driven resource for structural and functional annotations},
url = {http://dx.doi.org/10.1093/nar/gkz853},
volume = {48},
year = {2020}
}
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RIS format (EndNote, RefMan)

TY  - JOUR
AB  - The Protein Data Bank in Europe-Knowledge Base (PDBe-KB, https://pdbe-kb.org) is a community-driven, collaborative resource for literature-derived, manually curated and computationally predicted structural and functional annotations of macromolecular structure data, contained in the Protein Data Bank (PDB). The goal of PDBe-KB is two-fold: (i) to increase the visibility and reduce the fragmentation of annotations contributed by specialist data resources, and to make these data more findable, accessible, interoperable and reusable (FAIR) and (ii) to place macromolecular structure data in their biological context, thus facilitating their use by the broader scientific community in fundamental and applied research. Here, we describe the guidelines of this collaborative effort, the current status of contributed data, and the PDBe-KB infrastructure, which includes the data exchange format, the deposition system for added value annotations, the distributable database containing the assembled data, and programmatic access endpoints. We also describe a series of novel web-pages-the PDBe-KB aggregated views of structure data-which combine information on macromolecular structures from many PDB entries. We have recently released the first set of pages in this series, which provide an overview of available structural and functional information for a protein of interest, referenced by a UniProtKB accession.
AU  - PDBe-KB,consortium
DO  - nar/gkz853
EP  - 353
PY  - 2020///
SN  - 0305-1048
SP  - 344
TI  - PDBe-KB: a community-driven resource for structural and functional annotations
T2  - Nucleic Acids Research
UR  - http://dx.doi.org/10.1093/nar/gkz853
UR  - https://www.ncbi.nlm.nih.gov/pubmed/31584092
UR  - http://hdl.handle.net/10044/1/77984
VL  - 48
ER  -
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