CellProfiler

Open-source software for quantitative analysis of biological images.

  • Automated analysis
  • Can measure multiple properties at once
  • No prior experience in programming required
  • Can be run in batch mode to automate large scale analyses (see details here).
  • Compatible with Windows, Mac and Linux
  • Interfaces with ImageJ, Ilastik, OMERO, KNIME, and others
  • Opens 180+ file formats

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Using CellProfiler

Human cells
Drosophila cells
Tumours
Comet assay
Counting and scoring
Yeast colony classification
Yeast patch identification
Tissue neighbours
Wound healing
Illumination correction
Colocalisation analysis
Human cytoplasm-nucleus translocation
Imaging flow cytometry
Speckle counting
Object tracking
Worm toolbox

General enquiries


FILM
Sir Alexander Fleming Building
South Kensington Campus
Imperial College London
Exhibition Road
London SW7 2AZ, UK

film-service@imperial.ac.uk