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Journal articleRuffini G, Damiani G, Lozano-Soldevilla D, et al., 2023,
LSD-induced increase of Ising temperature and algorithmic complexity of brain dynamics
, PLoS Computational Biology, Vol: 19, Pages: 1-29, ISSN: 1553-734XA topic of growing interest in computational neuroscience is the discovery of fundamental principles underlying global dynamics and the self-organization of the brain. In particular, the notion that the brain operates near criticality has gained considerable support, and recent work has shown that the dynamics of different brain states may be modeled by pairwise maximum entropy Ising models at various distances from a phase transition, i.e., from criticality. Here we aim to characterize two brain states (psychedelics-induced and placebo) as captured by functional magnetic resonance imaging (fMRI), with features derived from the Ising spin model formalism (system temperature, critical point, susceptibility) and from algorithmic complexity. We hypothesized, along the lines of the entropic brain hypothesis, that psychedelics drive brain dynamics into a more disordered state at a higher Ising temperature and increased complexity. We analyze resting state blood-oxygen-level-dependent (BOLD) fMRI data collected in an earlier study from fifteen subjects in a control condition (placebo) and during ingestion of lysergic acid diethylamide (LSD). Working with the automated anatomical labeling (AAL) brain parcellation, we first create "archetype" Ising models representative of the entire dataset (global) and of the data in each condition. Remarkably, we find that such archetypes exhibit a strong correlation with an average structural connectome template obtained from dMRI (r = 0.6). We compare the archetypes from the two conditions and find that the Ising connectivity in the LSD condition is lower than in the placebo one, especially in homotopic links (interhemispheric connectivity), reflecting a significant decrease of homotopic functional connectivity in the LSD condition. The global archetype is then personalized for each individual and condition by adjusting the system temperature. The resulting temperatures are all near but above the critical point of the model i
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Journal articleScagliarini T, Nuzzi D, Antonacci Y, et al., 2023,
Gradients of O-information: Low-order descriptors of high-order dependencies
, Physical Review Research, Vol: 5, Pages: 1-8, ISSN: 2643-1564O-information is an information-theoretic metric that captures the overall balance between redundant and synergistic information shared by groups of three or more variables. To complement the global assessment provided by this metric, here we propose the gradients of the O-information as low-order descriptors that can characterize how high-order effects are localized across a system of interest. We illustrate the capabilities of the proposed framework by revealing the role of specific spins in Ising models with frustration, in Ising models with three-spin interactions, and in a linear vectorial autoregressive process. We also provide an example of practical data analysis on U.S. macroeconomic data. Our theoretical and empirical analyses demonstrate the potential of these gradients to highlight the contribution of variables in forming high-order informational circuits.
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Journal articleHerzog R, Rosas FE, Whelan R, et al., 2022,
Genuine high-order interactions in brain networks and neurodegeneration
, Neurobiology of Disease, Vol: 175, Pages: 1-15, ISSN: 0969-9961Brain functional networks have been traditionally studied considering only interactions between pairs of regions, neglecting the richer information encoded in higher orders of interactions. In consequence, most of the connectivity studies in neurodegeneration and dementia use standard pairwise metrics. Here, we developed a genuine high-order functional connectivity (HOFC) approach that captures interactions between 3 or more regions across spatiotemporal scales, delivering a more biologically plausible characterization of the pathophysiology of neurodegeneration. We applied HOFC to multimodal (electroencephalography [EEG], and functional magnetic resonance imaging [fMRI]) data from patients diagnosed with behavioral variant of frontotemporal dementia (bvFTD), Alzheimer's disease (AD), and healthy controls. HOFC revealed large effect sizes, which, in comparison to standard pairwise metrics, provided a more accurate and parsimonious characterization of neurodegeneration. The multimodal characterization of neurodegeneration revealed hypo and hyperconnectivity on medium to large-scale brain networks, with a larger contribution of the former. Regions as the amygdala, the insula, and frontal gyrus were associated with both effects, suggesting potential compensatory processes in hub regions. fMRI revealed hypoconnectivity in AD between regions of the default mode, salience, visual, and auditory networks, while in bvFTD between regions of the default mode, salience, and somatomotor networks. EEG revealed hypoconnectivity in the γ band between frontal, limbic, and sensory regions in AD, and in the δ band between frontal, temporal, parietal and posterior areas in bvFTD, suggesting additional pathophysiological processes that fMRI alone can not capture. Classification accuracy was comparable with standard biomarkers and robust against confounders such as sample size, age, education, and motor artifacts (from fMRI and EEG). We conclude that high-order interactions p
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Journal articleRajpal H, Martinez Mediano PA, Rosas De Andraca FE, et al., 2022,
Psychedelics and schizophrenia: Distinct alterations to Bayesian inference
, NeuroImage, Vol: 263, ISSN: 1053-8119Schizophrenia and states induced by certain psychotomimetic drugs may share some physiological and phenomenological properties, but they differ in fundamental ways: one is a crippling chronic mental disease, while the others are temporary, pharmacologically-induced states presently being explored as treatments for mental illnesses. Building towards a deeper understanding of these different alterations of normal consciousness, here we compare the changes in neural dynamics induced by LSD and ketamine (in healthy volunteers) against those associated with schizophrenia, as observed in resting-state M/EEG recordings. While both conditions exhibit increased neural signal diversity, our findings reveal that this is accompanied by an increased transfer entropy from the front to the back of the brain in schizophrenia, versus an overall reduction under the two drugs. Furthermore, we show that these effects can be reproduced via different alterations of standard Bayesian inference applied on a computational model based on the predictive processing framework. In particular, the effects observed under the drugs are modelled as a reduction of the precision of the priors, while the effects of schizophrenia correspond to an increased precision of sensory information. These findings shed new light on the similarities and differences between schizophrenia and two psychotomimetic drug states, and have potential implications for the study of consciousness and future mental health treatments.
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Journal articleHancock F, Cabral J, Luppi AI, et al., 2022,
Metastability, fractal scaling, and synergistic information processing: what phase relationships reveal about intrinsic brain activity
, NeuroImage, Vol: 259, Pages: 1-16, ISSN: 1053-8119Dynamic functional connectivity (dFC) in resting-state fMRI holds promise to deliver candidate biomarkers for clinical applications. However, the reliability and interpretability of dFC metrics remain contested. Despite a myriad of methodologies and resulting measures, few studies have combined metrics derived from different conceptualizations of brain functioning within the same analysis - perhaps missing an opportunity for improved interpretability. Using a complexity-science approach, we assessed the reliability and interrelationships of a battery of phase-based dFC metrics including tools originating from dynamical systems, stochastic processes, and information dynamics approaches. Our analysis revealed novel relationships between these metrics, which allowed us to build a predictive model for integrated information using metrics from dynamical systems and information theory. Furthermore, global metastability - a metric reflecting simultaneous tendencies for coupling and decoupling - was found to be the most representative and stable metric in brain parcellations that included cerebellar regions. Additionally, spatiotemporal patterns of phase-locking were found to change in a slow, non-random, continuous manner over time. Taken together, our findings show that the majority of characteristics of resting-state fMRI dynamics reflect an interrelated dynamical and informational complexity profile, which is unique to each acquisition. This finding challenges the interpretation of results from cross-sectional designs for brain neuromarker discovery, suggesting that individual life-trajectories may be more informative than sample means.
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Journal articleWang Z, Chen J, Rosas FE, et al., 2022,
A hypergraph-based framework for personalized recommendations via user preference and dynamics clustering
, Expert Systems with Applications, Vol: 204, Pages: 117552-117552, ISSN: 0957-4174The ever-increasing number of users and items continuously imposes new challenges to existent clustering-based recommendation algorithms. To better simulate the interactions between users and items in the recommendation system, in this paper, we propose a collaborative filtering recommendation algorithm based on dynamics clustering and similarity measurement in hypergraphs (Hg-PDC). The main idea of Hg-PDC is to discover several interest communities by aggregating users with high attention, and make recommendations within each community, thereby improving the recommendation performance and reducing the time cost. Firstly, we introduce a hypergraph model to capture complex relations beyond pairwise relations, while preserving attention relations in the network. In addition, we construct a novel hypergraph model, which defines a user and his evaluated items to form a hyperedge. Secondly, an extended game dynamics clustering method is proposed for the constructed hypergraph to aggregate users with high attention into the same interest community. Here, we combine the payoff function in game theory with the traditional dynamics clustering method. Finally, we apply the dynamics clustering results and a new similarity measurement strategy with user preferences to recommend items for target users. The effectiveness of Hg-PDC is verified by experiments on six real datasets. Experimental results illustrate that our algorithm outperforms state-of-the-art algorithms in prediction errors and recommendation performance.
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Journal articleVirgo N, Rosas FE, Biehl M, 2022,
Embracing sensorimotor history: Time-synchronous and time-unrolled Markov blankets in the free-energy principle.
, Behavioral and Brain Sciences, Vol: 45, Pages: e215-e215, ISSN: 0140-525XThe free-energy principle (FEP) builds on an assumption that sensor-motor loops exhibit Markov blankets in stationary state. We argue that there is rarely reason to assume a system's internal and external states are conditionally independent given the sensorimotor states, and often reason to assume otherwise. However, under mild assumptions internal and external states are conditionally independent given the sensorimotor history.
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Journal articleMediano PAM, Rosas FE, Bor D, et al., 2022,
The strength of weak integrated information theory
, Trends in Cognitive Sciences, Vol: 26, Pages: 646-655, ISSN: 1364-6613The integrated information theory of consciousness (IIT) is divisive: while some believe it provides an unprecedentedly powerful approach to address the ‘hard problem’, others dismiss it on grounds that it is untestable. We argue that the appeal and applicability of IIT can be greatly widened if we distinguish two flavours of the theory: strong IIT, which identifies consciousness with specific properties associated with maxima of integrated information; and weak IIT, which tests pragmatic hypotheses relating aspects of consciousness to broader measures of information dynamics. We review challenges for strong IIT, explain how existing empirical findings are well explained by weak IIT without needing to commit to the entirety of strong IIT, and discuss the outlook for both flavours of IIT.
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Journal articleMediano PAM, Rosas FE, Luppi AI, et al., 2022,
Greater than the parts: a review of the information decomposition approach to causal emergence.
, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol: 380, Pages: 20210246-20210246, ISSN: 1364-503XEmergence is a profound subject that straddles many scientific disciplines, including the formation of galaxies and how consciousness arises from the collective activity of neurons. Despite the broad interest that exists on this concept, the study of emergence has suffered from a lack of formalisms that could be used to guide discussions and advance theories. Here, we summarize, elaborate on, and extend a recent formal theory of causal emergence based on information decomposition, which is quantifiable and amenable to empirical testing. This theory relates emergence with information about a system's temporal evolution that cannot be obtained from the parts of the system separately. This article provides an accessible but rigorous introduction to the framework, discussing the merits of the approach in various scenarios of interest. We also discuss several interpretation issues and potential misunderstandings, while highlighting the distinctive benefits of this formalism. This article is part of the theme issue 'Emergent phenomena in complex physical and socio-technical systems: from cells to societies'.
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Journal articleNayak SM, Bari BA, Yaden DB, et al., 2022,
A Bayesian Reanalysis of a Trial of Psilocybin versus Escitalopram for Depression
<p>Objectives: To perform a Bayesian reanalysis of a recent trial of psilocybin (COMP360) versus escitalopram for Major Depressive Disorder (MDD) in order to provide a more informative interpretation of the indeterminate outcome of a previous frequentist analysis.Design: Reanalysis of a two-arm double-blind placebo controlled trial.Participants: Fifty-nine patients with MDD.Interventions: Two doses of psilocybin 25mg and daily oral placebo versus daily escitalopram and 2 doses of psilocybin 1mg, with psychological support for both groups.Outcome measures: Quick Inventory of Depressive Symptomatology–Self-Report (QIDS SR-16), and three other depression scales as secondary outcomes: HAMD-17, MADRS, and BDI-1A.Results: Using Bayes factors and ‘skeptical priors’ which bias estimates towards zero, for the hypothesis that psilocybin is superior by any margin, we found indeterminate evidence for QIDS SR-16, strong evidence for BDI-1A and MADRS, and extremely strong evidence for HAMD-17. For the stronger hypothesis that psilocybin is superior by a ‘clinically meaningful amount’ (using literature defined values of the minimally clinically important difference), we found moderate evidence against it for QIDS SR-16, indeterminate evidence for BDI-1A and MADRS, and moderate evidence supporting it for HAMD-17. Furthermore, across the board we found extremely strong evidence for psilocybin’s non-inferiority versus escitalopram. These findings were robust to prior sensitivity analysis.Conclusions: This Bayesian reanalysis supports the following inferences: 1) that psilocybin did indeed outperform escitalopram in this trial, but not to an extent that was clinically meaningful—-and 2) that psilocybin is almost certainly non-inferior to escitalopram. The present results provide a more precise and nuanced interpretation to previously reported results from this trial, and support the need for further research into the relative efficacy of
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