Search or filter publications

Search publications Search

Filter by type:

Filter by publication type

• Book
• Book chapter
• Conference paper
• Journal article
• Patent
• Report
• Software

Filter by year:

Filter from 2022202120202019201820172016201520142013201220112010200920082007200620052004200320022001 to Filter to 2022202120202019201820172016201520142013201220112010200920082007200620052004200320022001

---

Search results

• Journal article
  Oyarzún DA, Stan GB, 2012,

  Synthetic gene circuits for metabolic control: design tradeoffs and constraints

  , Journal of the Royal Society Interface, Vol: 10
  • Open Access Link
  • Cite
• Journal article
  Lossi NS, Dajani R, Freemont P, Filloux Aet al., 2011,

  Structure-function analysis of HsiF, a gp25-like component of the type VI secretion system, in Pseudomonas aeruginosa

  , MICROBIOLOGY-SGM, Vol: 157, Pages: 3292-3305, ISSN: 1350-0872
  • Author Web Link
  • Cite
  • Citations: 38
• Journal article
  Zhang H-T, Chen MZQ, Stan G-B, 2011,

  Fast Consensus Via Predictive Pinning Control

  , IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, Vol: 58, Pages: 2247-2258, ISSN: 1549-8328
  • Author Web Link
  • Cite
  • Citations: 96
• Journal article
  Dalchau N, Baek SJ, Briggs HM, Robertson FC, Dodd AN, Gardner MJ, Stancombe MA, Haydon MJ, Stan G-B, Goncalves JM, Webb AARet al., 2011,

  The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose

  , PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 108, Pages: 5104-5109, ISSN: 0027-8424
  • Author Web Link
  • Cite
  • Citations: 171
• Journal article
  Peccoud J, Anderson JC, Chandran D, Densmore D, Galdzicki M, Lux MW, Rodriguez CA, Stan G-B, Sauro HMet al., 2011,

  Essential information for synthetic DNA sequences

  , NATURE BIOTECHNOLOGY, Vol: 29, Pages: 22-22, ISSN: 1087-0156
  • Author Web Link
  • Cite
  • Citations: 33
• Journal article
  MacDonald JT, Barnes C, Kitney RI, Freemont PS, Stan G-BVet al., 2011,

  Computational design approaches and tools for synthetic biology

  , INTEGRATIVE BIOLOGY, Vol: 3, Pages: 97-108, ISSN: 1757-9694
  • Author Web Link
  • Cite
  • Citations: 57
• Journal article
  Yuan Y, Stan G-B, Warnick S, Goncalves JMet al., 2011,

  Robust dynamical network structure reconstruction.

  , Automatica, Vol: 47, Pages: 1230-1235
  • Publisher Web Link
  • Cite
• Journal article
  Dalchau N, Hubbard KE, Robertson FC, Hotta CT, Briggs HM, Stan G-B, Goncalves JM, Webb AARet al., 2010,

  Correct biological timing in Arabidopsis requires multiple light-signaling pathways

  , PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 107, Pages: 13171-13176, ISSN: 0027-8424
  • Author Web Link
  • Cite
  • Citations: 50
• Journal article
  Mhawej M-J, Brunet-Francois C, Fonteneau R, Ernst D, Ferre V, Stan G-B, Raffi F, Moog CHet al., 2009,

  Apoptosis characterizes immunological failure of HIV infected patients

  , CONTROL ENGINEERING PRACTICE, Vol: 17, Pages: 798-804, ISSN: 0967-0661
  • Author Web Link
  • Cite
  • Citations: 8
• Journal article
  Stan G-B, Belmudes F, Fonteneau R, Zeggwagh F, Lefebvre M-A, Michelet C, Ernst Det al., 2008,

  Modelling the influence of activation-induced apoptosis of CD4(+) and CD8(+) T-cells on the immune system response of a HIV-infected patient

  , IET SYSTEMS BIOLOGY, Vol: 2, Pages: 94-102, ISSN: 1751-8849
  • Author Web Link
  • Open Access Link
  • Cite
  • Citations: 13
• Journal article
  Zhang H-T, Chen MZ, Stan G-B, Zhou T, Maciejowski JMet al., 2008,

  Collective Behavior Coordination with Predictive Mechanisms

  , IEEE CIRCUITS AND SYSTEMS MAGAZINE, Vol: 8, Pages: 67-85, ISSN: 1531-636X
  • Author Web Link
  • Cite
  • Citations: 67
• Journal article
  Zhang H-T, Chen MZ, Zhou T, Stan G-Bet al., 2008,

  Ultrafast consensus via predictive mechanisms

  , EPL, Vol: 83, ISSN: 0295-5075
  • Author Web Link
  • Cite
  • Citations: 37
• Journal article
  Stan G-B, Sepulchre R, 2007,

  Analysis of interconnected oscillators by dissipativity theory

  , IEEE TRANSACTIONS ON AUTOMATIC CONTROL, Vol: 52, Pages: 256-270, ISSN: 0018-9286
  • Author Web Link
  • Cite
  • Citations: 203
• Journal article
  Sepulchre R, Stan GB, 2005,

  Feedback mechanisms for global oscillations in Lure systems

  , SYSTEMS & CONTROL LETTERS, Vol: 54, Pages: 809-818, ISSN: 0167-6911
  • Author Web Link
  • Cite
  • Citations: 18
• Journal article
  Stan GB, Embrechts JJ, Archambeau D, 2002,

  Comparison of different impulse response measurement techniques

  , JOURNAL OF THE AUDIO ENGINEERING SOCIETY, Vol: 50, Pages: 249-262, ISSN: 0004-7554
  • Author Web Link
  • Cite
  • Citations: 134
• Journal article
  Embrechts JJ, Archambeau D, Stan GB, 2001,

  Determination of the scattering coefficient of random rough diffusing surfaces for room acoustics applications

  , ACUSTICA, Vol: 87, Pages: 482-494, ISSN: 0001-7884
  • Author Web Link
  • Cite
  • Citations: 13
• Journal article
  Caro-Astorga J, Walker KT, Ellis T,

  Bacterial cellulose spheroids as building blocks for 2D and 3D engineered living materials

  <jats:title>Abstract</jats:title><jats:p>Engineered living materials (ELMs) based on bacterial cellulose (BC) offer a promising avenue for cheap-to-produce materials that can be programmed with genetically encoded functionalities. Here we explore how ELMs can be fabricated from millimetre-scale balls of cellulose occasionally produced by <jats:italic>Acetobacteriacea</jats:italic> species, which we call BC spheroids. We define a reproducible protocol to produce BC spheroids and demonstrate their potential for use as building blocks to grow ELMs in 2D and 3D shapes. These BC spheroids can be genetically functionalized and used as the method to make and grow patterned BC-based ELMs to design. We further demonstrate the use of BC spheroids for the repair and regeneration of BC materials, and measure the survival of the BC-producing bacteria in the material over time. This work forwards our understanding of BC spheroid formation and showcases their potential for creating and repairing engineered living materials.</jats:p>

  • Abstract
  • Cite
• Journal article
  Kreula SM, Kaewphan S, Ginter F, Jones PRet al.,

  Finding novel relationships with integrated gene-gene association network analysis of <i>Synechocystis sp. </i>PCC 6803 using species-independent text-mining

  <jats:p>The increasing move towards open access full-text scientific literature enhances our ability to utilize advanced text-mining methods to construct information-rich networks that no human will be able to grasp simply from 'reading the literature'. The utility of text-mining for well-studied species is obvious though the utility for less studied species, or those with no prior track-record at all, is not clear. Here we present a concept for how advanced text-mining can be used to create information-rich networks even for less well studied species and apply it to generate an open-access gene-gene association network resource for <jats:italic>Synechocystis sp.</jats:italic> PCC 6803, a representative model organism for cyanobacteria and first case-study for the methodology. By merging the text-mining network with networks generated from species-specific experimental data, network integration was used to enhance the accuracy of predicting novel interactions that are biologically relevant. A rule-based algorithm was constructed in order to automate the search for novel candidate genes with a high degree of likely association to known target genes by (1) ignoring established relationships from the existing literature, as they are already 'known', and (2) demanding multiple independent evidences for every novel and potentially relevant relationship. Using selected case studies, we demonstrate the utility of the network resource and rule-based algorithm to (<jats:italic>i</jats:italic>) discover novel candidate associations between different genes or proteins in the network, and (<jats:italic>ii</jats:italic>) rapidly evaluate the potential role of any one particular gene or protein. The full network is provided as an open source resource.</jats:p>

  • Abstract
  • Cite

This data is extracted from the Web of Science and reproduced under a licence from Thomson Reuters. You may not copy or re-distribute this data in whole or in part without the written consent of the Science business of Thomson Reuters.