Software - CellProfiler

CellProfiler

Open-source software for quantitative analysis of biological images.

• Automated analysis
• Can measure multiple properties at once
• No prior experience in programming required
• Can be run in batch mode to automate large scale analyses (see details here).
• Compatible with Windows, Mac and Linux
• Interfaces with ImageJ, Ilastik, OMERO, KNIME, and others
• Opens 180+ file formats

Source:
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Using CellProfiler

• Tutorials
• Published Pipelines:

• CellProfiler example images and pipelines:

Human cells
Drosophila cells
Tumours
Comet assay
Counting and scoring
Yeast colony classification
Yeast patch identification
Tissue neighbours
Wound healing
Illumination correction
Colocalisation analysis
Human cytoplasm-nucleus translocation
Imaging flow cytometry
Speckle counting
Object tracking
Worm toolbox