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• Journal article
  Ramboarina S, Garnett JA, Zhou M, Li Y, Peng Z, Taylor JD, Lee W-C, Bodey A, Murray JW, Alguel Y, Bergeron J, Bardiaux B, Sawyer E, Isaacson R, Tagliaferri C, Cota E, Nilges M, Simpson P, Ruiz T, Wu H, Matthews Set al., 2010,

  Structural Insights into Serine-rich Fimbriae from Gram-positive Bacteria

  , JOURNAL OF BIOLOGICAL CHEMISTRY, Vol: 285, Pages: 32446-32457, ISSN: 0021-9258
  • Cite
  • Citations: 45
• Journal article
  Lo W-Y, Lagrange AH, Hernandez CC, Harrison R, Dell A, Haslam SM, Sheehan JH, Macdonald RLet al., 2010,

  Glycosylation of β2 Subunits Regulates GABA_A Receptor Biogenesis and Channel Gating

  , JOURNAL OF BIOLOGICAL CHEMISTRY, Vol: 285, Pages: 31348-31361
  • Author Web Link
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  • Citations: 34
• Journal article
  Schornack S, van Damme M, Bozkurt TO, Cano LM, Smoker M, Thines M, Gaulin E, Kamoun S, Huitema Eet al., 2010,

  Ancient class of translocated oomycete effectors targets the host nucleus

  , PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 107, Pages: 17421-17426, ISSN: 0027-8424
  • Author Web Link
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  • Citations: 248
• Journal article
  Vossenkaemper A, Marches O, Fairclough PD, Warnes G, Stagg AJ, Lindsay JO, Evans PC, Luong LA, Croft NM, Naik S, Frankel G, MacDonald TTet al., 2010,

  Inhibition of NF-κB Signaling in Human Dendritic Cells by the Enteropathogenic <i>Escherichia coli</i> Effector Protein NleE

  , JOURNAL OF IMMUNOLOGY, Vol: 185, Pages: 4118-4127, ISSN: 0022-1767
  • Author Web Link
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  • Citations: 68
• Journal article
  Aquino G, Endres RG, 2010,

  Increased accuracy of ligand sensing by receptor diffusion on cell surface

  , PHYSICAL REVIEW E, Vol: 82, ISSN: 2470-0045
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  • Citations: 4
• Journal article
  Bartholomay LC, Waterhouse RM, Mayhew GF, Campbell CL, Michel K, Zou Z, Ramirez JL, Das S, Alvarez K, Arensburger P, Bryant B, Chapman SB, Dong Y, Erickson SM, Karunaratne SHPP, Kokoza V, Kodira CD, Pignatelli P, Shin SW, Vanlandingham DL, Atkinson PW, Birren B, Christophides GK, Clem RJ, Hemingway J, Higgs S, Megy K, Ranson H, Zdobnov EM, Raikhel AS, Christensen BM, Dimopoulos G, Muskavitch MATet al., 2010,

  Pathogenomics of <i>Culex quinquefasciatus</i> and Meta-Analysis of Infection Responses to Diverse Pathogens

  , SCIENCE, Vol: 330, Pages: 88-90, ISSN: 0036-8075
  • Cite
  • Citations: 144
• Journal article
  Tobias JA, Seddon N, Spottiswoode CN, Pilgrim JD, Fishpool LDC, Collar NJet al., 2010,

  Quantitative criteria for species delimitation

  , IBIS, Vol: 152, Pages: 724-746, ISSN: 0019-1019
  • Author Web Link
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  • Citations: 258
• Journal article
  Child MA, Epp C, Bujard H, Blackman MJet al., 2010,

  Regulated maturation of malaria merozoite surface protein-1 is essential for parasite growth

  , MOLECULAR MICROBIOLOGY, Vol: 78, Pages: 187-202, ISSN: 0950-382X
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  • Citations: 32
• Journal article
  Matthews S, 2010,

  ANONYMITY AND THE SOCIAL SELF

  , AMERICAN PHILOSOPHICAL QUARTERLY, Vol: 47, Pages: 351-363, ISSN: 0003-0481
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• Journal article
  Hitchen PG, Twigger K, Valiente E, Langdon RH, Wren BW, Dell Aet al., 2010,

  Glycoproteomics: a powerful tool for characterizing the diverse glycoforms of bacterial pilins and flagellins

  , BIOCHEMICAL SOCIETY TRANSACTIONS, Vol: 38, Pages: 1307-1313, ISSN: 0300-5127
  • Author Web Link
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  • Citations: 21
• Journal article
  Kay E, Lesk VI, Tamaddoni-Nezhad A, Hitchen PG, Dell A, Sternberg MJ, Muggleton S, Wren BWet al., 2010,

  Systems analysis of bacterial glycomes

  , BIOCHEMICAL SOCIETY TRANSACTIONS, Vol: 38, Pages: 1290-1293, ISSN: 0300-5127
  • Author Web Link
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  • Citations: 11
• Journal article
  Friedlingstein P, Prentice IC, 2010,

  Carbon-climate feedbacks: a review of model and observation based estimates

  , CURRENT OPINION IN ENVIRONMENTAL SUSTAINABILITY, Vol: 2, Pages: 251-257, ISSN: 1877-3435
  • Author Web Link
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  • Citations: 79
• Journal article
  Jovanovic G, Engl C, Mayhew AJ, Burrows PC, Buck Met al., 2010,

  Properties of the phage-shock-protein (Psp) regulatory complex that govern signal transduction and induction of the Psp response in <i>Escherichia coli</i>

  , MICROBIOLOGY-SGM, Vol: 156, Pages: 2920-2932, ISSN: 1350-0872
  • Cite
  • Citations: 31
• Journal article
  Jervis AJ, Langdon R, Hitchen P, Lawson AJ, Wood A, Fothergill JL, Morris HR, Dell A, Wren B, Linton Det al., 2010,

  Characterization of N-Linked Protein Glycosylation in <i>Helicobacter pullorum</i>

  , JOURNAL OF BACTERIOLOGY, Vol: 192, Pages: 5228-5236, ISSN: 0021-9193
  • Cite
  • Citations: 59
• Journal article
  Tobias JA, Aben J, Brumfield RT, Derryberry EP, Halfwerk W, Slabbekoorn H, Seddon Net al., 2010,

  SONG DIVERGENCE BY SENSORY DRIVE IN AMAZONIAN BIRDS

  , EVOLUTION, Vol: 64, Pages: 2820-2839, ISSN: 0014-3820
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  • Citations: 153
• Journal article
  Yan R, Simpson PJ, Matthews SJ, Cota Eet al., 2010,

  Backbone <SUP>1</SUP>H, <SUP>15</SUP>N, <SUP>13</SUP>C and Ile, Leu, Val methyl chemical shift assignments for the 33.5 kDa N-terminal domain of Candida albicans ALS1

  , BIOMOLECULAR NMR ASSIGNMENTS, Vol: 4, Pages: 187-190, ISSN: 1874-2718
  • Author Web Link
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  • Citations: 9
• Journal article
  Picco G, Julien S, Brockhausen I, Beatson R, Antonopoulos A, Haslam S, Mandel U, Dell A, Pinder S, Taylor-Papadimitriou J, Burchell Jet al., 2010,

  Over-expression of ST3Gal-I promotes mammary tumorigenesis

  , GLYCOBIOLOGY, Vol: 20, Pages: 1241-1250, ISSN: 0959-6658
  • Author Web Link
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  • Citations: 115
• Journal article
  Waterhouse RM, Povelones M, Christophides GK, 2010,

  Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins

  , BMC GENOMICS, Vol: 11, ISSN: 1471-2164
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  • Citations: 51
• Journal article
  Pressel S, Bidartondo MI, Ligrone R, Duckett JGet al., 2010,

  Fungal symbioses in bryophytes: New insights in the Twenty First Century

  , Phytotaxa, Vol: 9, Pages: 238-253, ISSN: 1179-3155
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• Journal article
  Polli D, Altoè P, Weingart O, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Kukura P, Mathies RA, Garavelli M, Cerullo Get al., 2010,

  Conical intersection dynamics of the primary photoisomerization event in vision.

  , Nature, Vol: 467, Pages: 440-443

  Ever since the conversion of the 11-cis retinal chromophore to its all-trans form in rhodopsin was identified as the primary photochemical event in vision, experimentalists and theoreticians have tried to unravel the molecular details of this process. The high quantum yield of 0.65 (ref. 2), the production of the primary ground-state rhodopsin photoproduct within a mere 200 fs (refs 3-7), and the storage of considerable energy in the first stable bathorhodopsin intermediate all suggest an unusually fast and efficient photoactivated one-way reaction. Rhodopsin's unique reactivity is generally attributed to a conical intersection between the potential energy surfaces of the ground and excited electronic states enabling the efficient and ultrafast conversion of photon energy into chemical energy. But obtaining direct experimental evidence for the involvement of a conical intersection is challenging: the energy gap between the electronic states of the reacting molecule changes significantly over an ultrashort timescale, which calls for observational methods that combine high temporal resolution with a broad spectral observation window. Here we show that ultrafast optical spectroscopy with sub-20-fs time resolution and spectral coverage from the visible to the near-infrared allows us to follow the dynamics leading to the conical intersection in rhodopsin isomerization. We track coherent wave-packet motion from the photoexcited Franck-Condon region to the photoproduct by monitoring the loss of reactant emission and the subsequent appearance of photoproduct absorption, and find excellent agreement between the experimental observations and molecular dynamics calculations that involve a true electronic state crossing. Taken together, these findings constitute the most compelling evidence to date for the existence and importance of conical intersections in visual photochemistry.

  • Abstract
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• Journal article
  Wiesler S, Weinzierl R, 2010,

  The linker domain of basal transcription factor TFIIB controls distinct recruitment and transcription stimulation functions

  , Nucleic Acids Res., Vol: 39, Pages: 464-474
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• Journal article
  Kokkinos P, Ziros P, Filippidou S, Mpampounakis I, Vantarakis Aet al., 2010,

  Molecular characterization of hepatitis A virus isolates from environmental and clinical samples in Greece

  , VIROLOGY JOURNAL, Vol: 7, ISSN: 1743-422X
  • Cite
  • Citations: 5
• Journal article
  Michoux F, Takasaka K, Boehm M, Nixon PJ, Murray JWet al., 2010,

  Structure of CyanoP at 2.8 Å: Implications for the Evolution and Function of the PsbP Subunit of Photosystem II

  , BIOCHEMISTRY, Vol: 49, Pages: 7411-7413, ISSN: 0006-2960
  • Author Web Link
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  • Citations: 45
• Journal article
  Lafortezza R, Coomes DA, Kapos V, Ewers RMet al., 2010,

  Assessing the impacts of fragmentation on plant communities in New Zealand: scaling from survey plots to landscapes

  , GLOBAL ECOLOGY AND BIOGEOGRAPHY, Vol: 19, Pages: 741-754, ISSN: 1466-822X
  • Author Web Link
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  • Citations: 34
• Journal article
  HLADYZ S, TIEGS SD, GESSNER MO, GILLER PS, RÎŞNOVEANU G, PREDA E, NISTORESCU M, SCHINDLER M, WOODWARD GUYet al., 2010,

  Leaf‐litter breakdown in pasture and deciduous woodland streams: a comparison among three European regions

  , Freshwater Biology, Vol: 55, Pages: 1916-1929, ISSN: 0046-5070

  <jats:title>Summary</jats:title><jats:p>1. Human land‐use has altered catchments on a large scale in most parts of the world, with one of the most profound changes relevant for streams and rivers being the widespread clearance of woody riparian vegetation to make way for livestock grazing pasture. Increasingly, environmental legislation, such as the EU Water Framework Directive (EU WFD), calls for bioassessment tools that can detect such anthropogenic impacts on ecosystem functioning.</jats:p><jats:p>2. We conducted a large‐scale field experiment in 30 European streams to quantify leaf‐litter breakdown, a key ecosystem process, in streams whose riparian zones and catchments had been cleared for pasture compared with those in native deciduous woodland. The study encompassed a west–east gradient, from Ireland to Switzerland to Romania, with each of the three countries representing a distinct region. We used coarse‐mesh and fine‐mesh litter bags (10 and 0.5 mm, respectively) to assess total, microbial and, by difference, macroinvertebrate‐mediated breakdown.</jats:p><jats:p>3. Overall, total breakdown rates did not differ between land‐use categories, but in some regions macroinvertebrate‐mediated breakdown was higher in deciduous woodland streams, whereas microbial breakdown was higher in pasture streams. This result suggests that overall ecosystem functioning is maintained by compensatory increases in microbial activity in pasture streams.</jats:p><jats:p>4. We suggest that simple coefficients of breakdown rates on their own often might not be powerful enough as a bioassessment tool for detecting differences related to land‐use such as riparian vegetation removal. However, shifts in the relative contributions to breakdown by microbial decomposers versus invertebrate detritivores, as revealed by the ratios of their associated breakdown rate coefficients, showed clear responses to land‐use.</jats:p>

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• Conference paper
  Lane SW, Sykes SM, Ferraro F, Lin CP, Gilliland DG, Williams DA, Scadden DT, Lo Celso Cet al., 2010,

  LEUKEMIA STEM CELLS OCCUPY NICHES THAT ARE PHYSICALLY DISTINCT AND INDEPENDENT OF THE NORMAL CONSTRAINTS THAT APPLY TO HEMATOPOIETIC STEM CELLS

  , 39th Annual Scientific Meeting of the ISEH - Society-for-Hematology-and-Stem-Cells, Publisher: ELSEVIER SCIENCE INC, Pages: S38-S38, ISSN: 0301-472X
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• Journal article
  Lodhi H, Muggleton S, Sternberg MJE, 2010,

  Multi-class Mode of Action Classification of Toxic Compounds Using Logic Based Kernel Methods

  , MOLECULAR INFORMATICS, Vol: 29, Pages: 655-664, ISSN: 1868-1743
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  • Citations: 2
• Journal article
  Salaun C, MacDonald AI, Larralde O, Howard L, Lochtie K, Burgess HM, Brook M, Malik P, Gray NK, Graham SVet al., 2010,

  Poly(A)-Binding Protein 1 Partially Relocalizes to the Nucleus during Herpes Simplex Virus Type 1 Infection in an ICP27-Independent Manner and Does Not Inhibit Virus Replication

  , JOURNAL OF VIROLOGY, Vol: 84, Pages: 8539-8548, ISSN: 0022-538X
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  • Citations: 44
• Conference paper
  Nollet M, Gaillard P, Minier F, Tanti A, Belzung C, Leman Set al., 2010,

  EFFECTS OF CHRONIC FLUOXETINE TREATMENT ON OREXINERGIC NEURONAL ACTIVATION AND OREXIN-RECEPTOR 2 EXPRESSION IN A MOUSE MODEL OF DEPRESSION

  , Meeting on Drugs, Psychiatric Disorders and Neurogenesis, Publisher: LIPPINCOTT WILLIAMS & WILKINS, Pages: 586-586, ISSN: 0955-8810
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• Journal article
  Therkildsen NO, Nielsen EE, Hussy K, Meldrup D, Geffen AJet al., 2010,

  Does DNA extraction affect the physical and chemical composition of historical cod (<i>Gadus morhua</i>) otoliths?

  , ICES JOURNAL OF MARINE SCIENCE, Vol: 67, Pages: 1251-1259, ISSN: 1054-3139
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  • Citations: 12

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