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Journal articleMaia RA, Oki Y, Medina I, et al., 2026,
Atlantic forest tree enhances photoprotective and thermotolerance in soils contaminated by mining tailings
, Theoretical and Experimental Plant Physiology, Vol: 38Large-scale mining disasters in tropical regions impose long-term pressures on ecosystems by degrading soil fertility and exposing native vegetation to chemical and physical disturbances. This study investigates whether Eugenia florida, a native tree species found in both tailings-impacted and reference areas of the Rio Doce Basin in Brazil, exhibits physiological adjustments that confer resilience to combined edaphic and thermal constraints. We assessed soil properties and 16 physiological traits related to nutrient status, photosynthetic efficiency, photoprotection, and thermal tolerance. Soils in the impacted area exhibited markedly lower organic matter, cation exchange capacity, and nutrient concentrations, along with increased iron concentration. Despite a 10% reduction in nitrogen balance index, plants in the impacted area exhibited 10% more chlorophyll and 19% more flavonoids, indicating compensatory pigment production and enhanced antioxidant capacity. Photosynthetic performance remained stable across environments, but individuals in the impacted area displayed elevated regulated energy dissipation and reduced unregulated energy loss, suggesting efficient photoprotective adjustments. Transient fluorescence analyses revealed intensified excitation fluxes and greater heat dissipation per reaction centre. Thermal thresholds, defined as temperatures causing 15% and 50% reductions in photosynthetic efficiency, were significantly higher in impacted individuals. Multivariate analyses identified excitation flux traits as key predictors of thermal resilience. Physiological function in E. florida is sustained through integrated plastic responses under long-term soil degradation and thermal constraints. Its ability to modulate energy fluxes and antioxidant defences highlights its potential as a candidate species for ecological restoration in tropical regions increasingly affected by human disturbance and climate extremes.
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Journal articleHui T-Y, Epopa PS, Millogo AA, et al., 2026,
Variance partitioning reveals contrasting random effect contributions to the density and species composition of malaria-transmitting mosquitoes in Western Burkina Faso
, Parasites and Vectors, Vol: 19, ISSN: 1756-3305Background Spatial-temporal variation exists in the density and species composition of malaria-carrying mosquitoes, which will in turn influence the transmission of the disease. While there has been extensive research on seasonality and other main drivers of the vector populations, the heterogeneity partitioned as random effects at various spatial-temporal scales is just as important but has not attracted the same attention. Methods To investigate the relative contributions of the between-house, between-village, and between year variations, as well as other house-level covariates such as inhabitant number and bed net usage on vector density and species composition, intensive Pyrethroid Spray Catches (PSC) sampling was conducted across a 60-month period between 2012-2019 from four villages in the Sudano-Sahelian region of Burkina Faso. Results For density, measured by female Anopheles gambiae s.l. counts, our modelling showed that the between-house variation was the largest variance component, followed by the between year then between-village variation, after accounting for seasonality and other covariates. Density increased with the number of inhabitants within a household but was uncorrelated with bed net presence. A subset of female mosquitoes was genotyped for species identification, and the composition of An. coluzzii and An. gambiae, the two dominant vectors in the region, varied markedly across villages without an overall trend. The between-village variance contributed up to 76% of the total random variation in species composition, followed by the between-year variance. The between-house variation was statistically insignificant. Neither household size nor bed net usage had any impact on species composition. Conclusions Interestingly, the between-house component of variation was the largest contributor when measuring mosquito density, but it was the least important for species composition. For between-village variation the converse was found. Together with
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Journal articleDi Domenico F, Kucharczyk MW, Patel R, et al., 2026,
Peri-operative pregabalin does not alter behavioural or diffuse noxious inhibitory control responses in two rat models of chronic pain
, PAIN Reports, ISSN: 2471-2531Introduction: Multiple mechanisms contribute to the experience of pain where the use of model organisms to dissect mechanistically sensory regulatory circuitry is a vital component of discovering underlying causes of persistent pain in disease states. Such disease states can be modelled in animals using surgical procedures that, ethically, should involve administration of analgesia. However, since basic pain researchers often wish to measure pain-related events, animals may be denied peri-operative analgesia to avoid adversely influencing experimental outcomes. Methods: We conducted a structured review of peri-operative analgesia usage in rat spinal nerve ligation (SNL) and cancer-induced bone pain (CIBP) models. Using a combination of behavioural testing and in vivo electrophysiology in the dorsal horn of the spinal cord, we assessed the impact of peri-operative pregabalin on nociceptive behaviours in the acute recovery phase, and behavioural and electrophysiological experimental outcomes in the established phase, of rat SNL and CIBP models.Results: A literature search revealed that, for studies using rat models of SNL or CIBP, only 5.37 % and 12.69 % respectively reported the use of peri-operative analgesia. We then demonstrated that the use of pregabalin as a peri-operative analgesic reduced mechanical hypersensitivity in the acute period following SNL surgery, with no impact on behavioural, electrophysiological or neuropharmacological outcomes in the established phase of either model.Conclusions: This study challenges the basic science researcher’s reasoning that peri-operative analgesia confounds neurobiological outcomes. The use of peri-operative analgesia should be an important consideration to improve animal welfare in chronic models of pain.
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Journal articleOh J, Jiménez JI, Kim J, 2026,
Safe and resource-aware microbial design for food production
, Current Opinion in Biotechnology, Vol: 100, ISSN: 0958-1669Precision fermentation is redefining microbial food manufacturing by enabling programmable biosynthesis of nutrients and functional ingredients. Despite this progress, industrial-scale deployment is limited by metabolic burden, growth-production trade-offs, biosafety concerns, and the costs of downstream processing. Conventional intracellular systems inherently generate host-derived impurities and endotoxins, challenging food-grade standards. Here, we review platform-level advances that decouple biosynthesis from cellular constraints and streamline process design, with a focus on approaches aligned to food industry requirements. We highlight cell-free systems and non-replicative minicells as intrinsically contained production chassis, detail advances in secretion and efflux engineering for efficient extracellular product recovery, and discuss division-of-labor microbial consortia to address resource allocation limits. Together, these innovations integrate biosafety and process efficiency, providing a safe-by-design framework for next-generation microbial food systems that meet both regulatory and industrial needs.
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Journal articleMajumdar A, Bagchi D, Kotta-Loizou I, et al., 2026,
The One Health resistome: Integrating environmental, microbial, and human antimicrobial resistance surveillance and risk analysis in the digital age.
, J Hazard Mater, Vol: 513Antimicrobial resistance (AMR) and antibiotic resistance (ABR) represent one of the most pressing global health threats, driven by the complex interplay between human, animal, and environmental factors. The One Health resistome framework recognises that resistance genes circulate continuously across clinical, agricultural, and environmental compartments through horizontal gene transfer, co-selection mechanisms, and anthropogenic contamination. This comprehensive review synthesises current evidence on integrated AMR surveillance, examining how digital technologies are transforming our capacity to monitor, predict, and respond to resistance emergence. Key advances include whole-genome sequencing enabling high-resolution pathogen tracking, metagenomics revealing environmental resistome diversity, machine learning algorithms predicting resistance phenotypes with > 85% accuracy, and point-of-care diagnostics extending sophisticated testing to resource-limited settings. Geographic information systems facilitate spatial hotspot identification, while wastewater-based surveillance provides early warning capabilities, detecting resistance genes before clinical manifestation. Despite technological progress, substantial challenges persist: fragmented data streams across sectors, lack of standardised environmental monitoring methods, limited laboratory capacity in low- and middle-income countries, and chronic underfunding. Emerging technologies, portable nanopore sequencing, CRISPR-based diagnostics, artificial intelligence, and blockchain-enabled data governance promise to address these gaps. Realising comprehensive One Health resistome surveillance requires sustained investment in interoperable digital infrastructure, international standardisation, capacity building, and political commitment to cross-sectoral coordination, prioritising equitable global implementation.
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Journal articleNollet M, Ba W, Anuncibay Soto B, et al., 2026,
Modeling the prodromal phase of Alzheimer’s disease: Selective amyloid-driven failure of cholinergic medial septal neurons perturbs REM sleep, cognition, emotion, and broadcasts pathology in aging mice
, eLife, ISSN: 2050-084X -
Journal articleMajumdar A, Kotta-Loizou I, Buck M, et al., 2026,
Temperature-dependent biofilm and sublancin production arrest soil arsenic and antibiotic resistance gene mobility.
, J Hazard Mater, Vol: 512Climate change-induced warming and arsenic soil contamination synergistically threaten agricultural sustainability by restructuring microbial communities and accelerating antimicrobial resistance dissemination. Here, through integrated greenhouse and field trials, we demonstrate that Bacillus subtilis 168-derived biofilm and sublancin, a glycosylated antimicrobial peptide, simultaneously immobilise rhizospheric arsenic and suppress horizontal transfer of antibiotic resistance genes (ARGs). Temperature-dependent biofilm formation (25-35°C) enhanced arsenic sequestration within the extracellular polymeric substance matrix, with SEM-EDX revealing a 74% increase in arsenic weight percentage at 35°C and ToF-SIMS confirming ∼14-fold and ∼9-fold increases in root-associated arsenic on biofilm-colonised surfaces in greenhouse and field trials, respectively. Sublancin production peaked at 30°C (129.72 mg L⁻¹), selectively suppressing all 12 tested pathogenic Gram-positive species by 74-86% while preserving Gram-negative communities. Bio-amendment reduced horizontal gene transfer frequency by 74.7% (p < 0.001) across all temperature regimes. Transcriptomic profiling revealed coordinated upregulation of exopolysaccharide biosynthesis (FDR ∼1.0 × 10⁻²⁷) and sublancin machinery (sunA: +3.5 log₂), alongside downregulation of conventional ARGs (vanA, blaTEM: -2.5 to -4.0 log₂). These findings establish sublancin as a dual-function, climate-adaptive soil bio-amendment simultaneously addressing arsenic bioaccumulation and antibiotic resistance gene dissemination under warming scenarios.
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Journal articleDas A, Majumdar A, Thakur BK, et al., 2026,
Integrated Groundwater Management and Arsenic Mitigation in the Indo-Gangetic Plain: Aligning Strategies with Global Sustainability Goals
, Water, Air, & Soil Pollution, Vol: 237, ISSN: 0049-6979 -
Journal articleZhao Z, Vercellino I, Whitelegge JP, et al., 2026,
Cryo-EM structures of naturally occurring dimeric photosystem II complexes lacking the Mn₄CaO₅ cluster
, Nature Communications, ISSN: 2041-1723 -
Journal articleUrban MC, Zurell D, Bocedi G, et al., 2026,
A global research coordination programme is urgently needed for biodiversity.
, Nat Ecol Evol -
Journal articleBose A, Bopanna Y, Shetty P, et al., 2026,
Therapeutic zinc targets dysregulated GC-C signaling and restores ileal defects in a preclinical model of familial diarrheal disease.
, Am J Physiol Gastrointest Liver PhysiolHyperactivating mutations in guanylyl cyclase C (GC-C) are monogenic causes of early-onset inflammatory bowel disease, familial diarrheal syndrome and congenital secretory diarrhea. The mechanisms linking elevated cGMP levels to immune imbalance remain poorly defined. Here, using a preclinical model of a disease-associated GC-C mutation, we observe pleiotropic alterations in the small intestinal epithelium. Transcriptomic and functional analyses revealed impaired Paneth and goblet cell differentiation, compromised barrier integrity, heightened epithelial permeability, and increased proinflammatory cytokine levels. Intestinal organoids from mutant mice exhibited amplified cGMP responses to GC-C ligands and defects in secretory lineage specification, confirming cell-autonomous mechanisms. Strikingly, oral zinc administration suppressed aberrant GC-C activity, normalized cGMP levels and restored barrier function. These findings highlight the central role of epithelial cGMP signaling in coordinating barrier integrity and immune-epithelial interactions, and identify zinc as a tractable therapeutic strategy for GC-C-mediated intestinal disorders.
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Journal articleGroff A, Lu Y, Feeney M, et al., 2026,
Sustainable production of myoglobin meat protein in plant chloroplasts
, Frontiers in Plant Science, ISSN: 1664-462XAlternative routes for producing animal proteins are crucial for reducing the reliance on traditional livestock farming, which contributes significantly to greenhouse gas emissions, deforestation, and water consumption. Myoglobin (Mb) is an important oxygen-binding hemoprotein found in vertebrate muscle, that enhances the nutritional and sensorial properties of meat. Due to its unique functionality, Mb has been heterologously expressed in a variety of organisms, although only transient expression in Nicotiana benthamiana has been reported for higher plants. In this study, we used chloroplast transformation technology to express porcine Mb in higher plants (tobacco, a non-edible model plant, and lettuce, an edible host) and bovine Mb in the green alga Chlamydomonas reinhardtii. Mb accumulation was estimated by immunoblotting and found to be much higher in tobacco (2.7% total soluble protein (TSP)) and lettuce (1.5% TSP) than Chlamydomonas reinhardtii (<0.25% TSP). The expression in tobacco chloroplasts is also superior to tobacco nuclear expression (using either the cauliflower mosaic virus 35S promoter or Arabidopsis thaliana ubiquitin promoter). Total heme levels were elevated in myoglobin-producing mutants compared to control plants, although porcine Mb purified from tobacco leaves exhibited approximately 35% heme-binding (compared to 80% heme-binding in E. coli-expressed Mb), despite being correctly folded, suggesting that heme availability might be a bottleneck. Overall, our work describes the first report of stable Mb production in higher plants and its effect on photosynthesis and heme levels. This provides a foundation for future plant-made animal proteins for food applications.
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Journal articleFrankel G, 2026,
Phospholipid-1 independent biogenesis and function of the RP4 conjugation pilus
, Nature Communications, ISSN: 2041-1723Bacterial conjugation, the process of horizontal gene transfer between bacteria, is initiated by mating pair formation (MPF) via a conjugative pilus. Conjugation of the IncP RP4 plasmid is mediated by short mating pili. Here, we report the cryo-EM structure of the RP4 pilus at 2.74 Å resolution. Uniquely, both the structural and quantitative mass spectral analyses revealed that the cyclic TrbC pilin subunit is not lipidated. Consistently, an E. coli pgsA mutant lacking phosphatidylglycerol (PG) can serve as a donor of RP4 but not of F- (pKpQIL), H- (R27) or W- (R388) pili, whose biogenesis and DNA transfer is PG-dependent. RP4 is the first example of a lipid-independent functional mating pilus. This discovery suggests that an amphipathic lipid moiety is not universally essential for the biogenesis of conjugative pili and MPF, providing an alternative model for their assembly and function. These data expand our understanding of the diverse bacterial mechanisms employ to transfer genetic material.
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Journal articleTarantola L, Tyler EJ, Liu Y, et al., 2026,
Glycosylated extracellular matrix drives immune suppression by modulating macrophage-T cell crosstalk in triple-negative breast cancer.
, Nat Commun, Vol: 17The tumor extracellular matrix (ECM) is increasingly recognized as a key driver of immune suppression and therapy resistance in cancer. However, the specific ECM components and mechanisms that create this immunosuppressive environment remain poorly understood, hindering the development of new therapies. Here, we use comprehensive multi omics profiling of triple-negative breast cancer (TNBC), an aggressive and treatment-resistant subtype, to investigate this issue. We report that ECM immunomodulation in TNBC is mediated by post-translational glycan modifications on ECM proteins. Using decellularized human TNBC samples, we show that targeted enzymatic removal of these ECM glycans modifies the tumor immune microenvironment. This modification reprograms tumor-associated myeloid cells toward an immunomodulatory phenotype and improves infiltration of T cells. Notably, ECM desialylation alters selectin and selectin-ligand programs on T cells, consistent with improved trafficking and intratumoral access. In parallel, macrophage-T cell interactions are reshaped, leading to reduced T cell exhaustion. Our findings identify ECM glycan modifications as critical regulators of the innate and adaptive TNBC immune microenvironment. They suggest that targeting ECM glycosylation could offer potential strategies to boost anti-tumor immunity in this aggressive breast cancer subtype.
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Journal articleRibardo DA, Singh NK, Beeby M, et al., 2026,
The Campylobacter jejuni flagellar V-ring discerns viscosity levels to alter swimming velocity, metabolic gene expression, and fitness.
, Proc Natl Acad Sci U S A, Vol: 123Campylobacter jejuni is an intestinal commensal of birds and animals and a leading cause of bacterial diarrheal disease in humans. In hosts, C. jejuni primarily resides in the mucus layer atop the lower intestinal epithelium. Persistence in this niche requires a single flagellar motor at both C. jejuni poles that generates high torque for flagellar rotation to facilitate motility and high swimming velocities. Unlike many bacterial flagellates, C. jejuni swimming velocity increases as external viscosity increases. We identified a complex formed by FlgV, VidA, and VidC (Cjj81176_1732) positioned near the MS-ring-rotor junction in the flagellar motor we annotated as the V-ring. Viscosity-influenced growth, modulation of swimming velocity, and transcription of iron/heme acquisition, respiratory, and energy-generating systems were dependent on the V-ring. C. jejuni ΔflgV and ΔvidC populations lacking a complete V-ring were motile, but could not optimally modulate swimming velocity. Like nonmotile flagellar stator or filament mutants, motile V-ring mutants had in vivo and in vitro growth and viability defects and dysregulated transcription of genes likely impacting physiology. Because the V-ring mutants behaved similarly as nonmotile mutants that experience little to no viscous drag on the filament, we propose C. jejuni V-ring mutants cannot detect viscous drag on their rotating filaments. We propose the V-ring evolved in C. jejuni and potentially other bacteria producing high torque flagellar motors to monitor external viscosity information via viscous drag on the rotating flagellar filament to adjust swimming velocity, transcription, and physiology for optimal fitness in different host lower intestinal niches.
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Journal articleFerrando-Marco M, Berger S, Barkoulas M, 2026,
Transcriptional feedback targeting Wnt pathway components reveals hidden heterogeneity in C. elegans seam cell lineages.
, GeneticsAsymmetric cell division in the epidermal stem cells of Caenorhabditis elegans, known as seam cells, relies on the Wnt/β-catenin asymmetry pathway to generate daughter cells with distinct fates. However, whether components of this pathway components are transcriptionally regulated during these divisions remains unclear. Here, we employ single molecule fluorescence in situ hybridisation to quantify mRNA distributions of key Wnt pathway components during L2 symmetric and asymmetric seam cell divisions. We find that transcripts encoding the negative regulators pry-1/Axin and apr-1/APC are enriched in posterior daughter cells, while those encoding the positive regulators sys-1/β-catenin, wrm-1/β-catenin, and lit-1/NLK, along with the transcription factor pop-1/TCF, are enriched in anterior daughter cells. Strikingly, molecular asymmetries are already evident following the L2 symmetric division, with anterior and posterior daughters exhibiting distinct levels of Wnt component expression and Wnt pathway activation. These mRNA distributions are surprising considering the established protein localisations that underpin the Wnt asymmetry model and suggest extensive post-divisional transcriptional regulation. We further demonstrate that pop-1 and pry-1 asymmetric expression partly depends on Wnt signalling activity. Investigation of protein distributions using knock-in reporters for PRY-1 and CAM-1 showed that protein accumulation patterns at L2 are consistent with transcript levels. Our findings uncover transcriptional feedback within the Wnt pathway that may reinforce robust fate specification and reveal molecular heterogeneity in seam cells with potential functional consequences for lineage behaviour.
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Journal articleOliver TJ, Elias E, Consoli G, et al., 2026,
Far-red chlorophyll d clusters extend photosystem I absorption toward the red limit.
, Sci Adv, Vol: 12Oxygenic photosynthesis is usually limited to visible light, but the marine cyanobacterium Acaryochloris marina pushes this boundary by harvesting far-red photons with chlorophyll d. The best-studied strain, MBIC11017, unexpectedly lacks low-energy chlorophylls ("red forms") in photosystem I, limiting absorption beyond 740 nanometers. Here, we show that another strain, A. marina NIES-2412, has evolved a strategy to absorb far-red photons up to 760 nanometers. Combining time-resolved fluorescence spectroscopy with cryo-electron microscopy at 2.64-angstrom resolution, we identify two distinct classes of chlorophyll d red forms in its photosystem I. One class originates from classical charge-transfer-exciton mixing, while the other arises purely from excitonic interactions. Mapping all 96 chlorophylls d reveals the precise pigments responsible for these far-red states. We also uncover a previously unreported subunit, PsaX2, which stabilizes the photosystem I complex and shapes pigment geometry and energetics to enable the formation of red forms. Last, we show that the protein modifications responsible for binding and tuning these red forms are widespread across the Acaryochloris genus but not within the model MBIC11017 strain. Far-red photons lie close to the energetic limit of oxygenic photosynthesis; their efficient use therefore requires fine-tuning of the photosynthetic machinery. To our knowledge, our findings provide the structural and mechanistic basis of one of the most red-shifted photosystem I complexes identified to date, highlighting a distinct adaptive strategy in far-red light environments and offering design principles for extending photosynthesis in crops into the infrared.
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Journal articleBiswas P, Mishra V, Sanchez-Garrido J, et al., 2026,
Context-dependent epithelial and immune programs shape intestinal resilience or vulnerability following prior colitis
, Cellular and Molecular Gastroenterology and Hepatology (CMGH), ISSN: 2352-345XBackground & AimsPrior intestinal inflammation can leave durable immune and epithelial alterations, yet how these changes influence responses to subsequent injury remains unclear. Infectious and sterile colitis share core features, including barrier disruption and cytokine secretion. We therefore investigated whether the nature of the initial inflammatory event shapes protection or susceptibility during later intestinal insult.MethodsWe used reciprocal mouse models of Citrobacter rodentium (CR) infection and dextran sodium sulphate (DSS)-induced colitis to define how prior infectious versus sterile colitis shapes secondary disease. Barrier integrity, immune cell populations, cytokine production, and susceptibility to wild-type and CR mutants that cause limited epithelial barrier disruption were assessed.ResultsMice recovered from CR infection were protected against DSS-induced colitis, displaying reduced weight loss, preserved epithelial architecture, and lower inflammatory pathology. This protection required type III secretion system effector-mediated epithelial injury during primary infection and was associated with sustained IL-17A signalling, which contributed to the protective phenotype. In contrast, mice recovered from DSS colitis exhibited persistent epithelial barrier defects, chronic colonic neutrophilia, and heightened susceptibility to CR infection despite elevated IL-17A. Infection with CR mutants that cause minimal epithelial damage still resulted in severe disease in DSS-experienced mice, indicating that unresolved epithelial barrier dysfunction is a major contributor to vulnerability.ConclusionsThe nature of the primary colitis is associated with distinct epithelial and immune programs that persist beyond resolution of inflammation. Infectious colitis is associated with a protective mucosal state where IL-17A is a key contributor in a broader protective response, whereas sterile colitis is associated with persistent epithelial barrier dysfunction
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Journal articleKim S, Matas-Gil A, Endres RG, 2026,
How nature discovers rare Turing islands: Exploration by common limit cycles.
, Proc Natl Acad Sci U S A, Vol: 123Turing patterns are a cornerstone of biological self-organization, yet their emergence typically requires finely tuned parameters occupying narrow regions of high-dimensional space. This poses a fundamental challenge: how can evolving biological systems reliably find and exploit such rare conditions? In this work, we propose that common biochemical limit cycles, such as those arising from genetic feedback loops, can act as natural explorers of Turing space. By coupling a reaction-diffusion system to an orbit that modulates some of its parameters, we show that the system can dynamically sweep through Turing-permissive regimes and generate transient spatial patterns. We use an entropy-based measure in Fourier space to quantify pattern formation and demonstrate how cycles enhance the detectability and robustness of Turing islands. We further explore how coupling to positional gradients increases reproducibility, suggesting a route from oscillatory dynamics to stable developmental programs. Our results highlight a powerful mechanism by which nature might bootstrap complex spatial structure from simple temporal motifs.
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Journal articleShenoy A, 2026,
GBP1 recruitment to actin-rich pedestals of extracellular Gram-negative bacteria promotes pyroptosis
, EMBO Journal, ISSN: 0261-4189 -
Journal articleBa W, Harding E, Nollet M, et al., 2026,
Wake-active brainstem GABA neurons signal sleep pressure by upregulating AMPA receptors to drive rebound sleep
, Current Biology, Vol: 36, Pages: 2823-2839.e4, ISSN: 0960-9822How the brain compensates for sleep deprivation (SD) by generating recovery sleep (RS) is not understood. Using Ca²⁺ photometry, we identified a WAKE/rapid eye movement sleep (REMS)-active somatostatin/parvalbumin GABAergic population in the mouse brainstem oral pontine reticular nucleus (PnOVgat). Following SD, PnOVgat cells transiently switched for the first hour to higher activity during non-REMS (NREMS), promoting RS. Chemogenetic activation of PnOVgat neurons prolonged NREMS, whereas ablation blunted electroencephalogram (EEG) delta power rebound and slowed RS accumulation. During RS, the selective switch of PnOVgat cells to having higher Ca2+ levels in NREMS correlated with elevated levels of synaptic proteins PSD95, activated calmodulin-dependent kinase II CaMKII (pCaMKII T286), activated PKA (pPKA T197), and GluA1-containing AMPA receptor subunits with enhanced serine phosphorylation. All increases started during SD and persisted after the first hour of RS. Patch-clamp recordings demonstrated increased postsynaptic AMPA/sleep homeostasis (NMDA) receptor ratios in PnOVgat cells 1 h after RS, indicating increased excitability and greater capacity to drive RS. In contrast, an intermingled population of GABA/glycinergic neurons did not respond to SD, despite having similar baseline WAKE/REMS activities and an ability to promote NREMS. The PnO also contained an intermingled population of excitatory PnOVglut2 WAKE/REMS-active neurons; lesioning them caused hypoactivity, but sleep or WAKE amounts were unaffected. The synaptic homeostasis hypothesis (SHY) proposes that as wakefulness progresses, synaptic AMPA receptor activity is enhanced, and subsequently downregulated during NREMS to rebalance circuit function. We suggest that a variation of SHY implements catching up on lost sleep, with glutamate receptor plasticity in the PnO tracking time awake and adjusting NREMS amounts accordingly.
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Journal articleLeong M, Consoli G, Davis G, et al., 2026,
Mapping the absorption landscape of far-red Photosystem II
, Nature Communications, ISSN: 2041-1723Far-red light photoacclimation enables some cyanobacteria to survive in white-light-depleted environments by extending the red limit of photosynthesis. In far-red Photosystem II, paralogous subunits replace their canonical counterparts, allowing the incorporation of some chlorophyll f molecules and one chlorophyll d that are red-shifted and spectrally distinct from the chlorophyll a manifold, and from each other. Here, we present a comparative study of far-red Photosystem II from Chroococcidiopsis thermalis PCC 7203 and Calothrix sp. NIES-3974. In C. thermalis, the cryo-electron microscopy structure reveals the far-red-exclusive subunit, PsbH2’, which forms part of a chlorophyll f binding site. We also assign four chlorophyll f sites using sequence comparisons and electrostatic potential analyses. In Calothrix, psbH2’ is absent, and the same analyses show that only two of these chlorophyll f sites are present. Comparative phylogenetic, structural, and spectroscopic analyses allow the assignment of specific wavelengths to all the red-shifted chlorophylls. This provides the framework needed to model excitation energy transfer in far-red Photosystem II, and to understand the conserved features that allow survival under far-red light.
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Journal articleLiseth O, Appleton E, Kendall B, et al., 2026,
Engagement of the TCR against an oncolytic virus generates a population of effector CAR T cells with potent antitumor activity.
, Sci Adv, Vol: 12Chimeric antigen receptor (CAR) T cell therapy faces many challenges against solid tumors including T cell exhaustion and poor CAR durability. Here, we show that engaging the CAR T cell endogenous T cell receptor (TCR) using an oncolytic virus enhances CAR T cell functionality, durability, and therapy. Upon combination therapy of solid tumors with CAR T cells and vesicular stomatitis virus (VSV), a subpopulation of antiviral, TCR-primed CAR T cells was generated with enhanced effector functions, altered activation states, and differential gene and protein expression when compared to non-TCR-primed CAR T cells. Single-cell RNA sequencing showed clonal expansion of anti-VSV CAR T cells and enhancement of effector-associated genes with VSV-mediated CAR T cell expansion. CD4 T cells played a pivotal role in the development of these TCR-primed CAR T cells. These results provide a strong rationale both for a novel use of systemic oncolytic virotherapy and for directly exploiting the CAR T cell TCR to fine tune the CAR T cell phenotype and function.
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Journal articleMadhuprakash J, Toghani A, Pai H, et al., 2026,
A potato late blight pathogen effector interacts with ENTH-domain protein TOL9a and an activated helper NLR to suppress immunity.
, Sci Adv, Vol: 12Pathogens counteract central nodes of NLR immune receptor networks to suppress immunity. However, the mechanisms by which pathogens hijack helper NLR pathways are poorly understood. We show that an effector from the late blight pathogen Phytophthora infestans interacts with the host protein NbTOL9a and a helper NLR to suppress immunity. We solved the crystal structure of the RXLR-LWY effector AVRcap1b in complex with the ENTH domain of NbTOL9a. The structure revealed that, unlike other RXLR-LWY effectors, AVRcap1b has a previously unidentified L-shaped fold that defines a distinct structural family of effectors in the genus Phytophthora. We defined the AVRcap1b/NbTOL9a binding interface and designed effector mutants that do not bind NbTOL9a, impairing immune suppression. This suggests that ENTH binding is required for full virulence activity. Last, we show that AVRcap1b associates specifically with activated NbNRC2 independently of NbTOL9a binding. We propose a model in which the effector interconnects NbNRC2 with the NbTOL9a pathway. Our results illustrate a previously uncharacterized pathogen mechanism to hijack NLR pathways and suppress immunity.
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Journal articleGan W, Alizadeh N, Best M, et al., 2026,
An eco-evolutionary optimality model explains the acclimated temperature response of photosynthesis
, New Phytologist, Vol: 250, Pages: 2884-2899, ISSN: 0028-646XThe optimal temperature of net photosynthesis (Topt) generally increases with plant growth temperature. Changes in Topt are associated with changes in the maximum carboxylation capacity at 25 °C (Vcmax25) and the maximum electron transport rate at 25 °C (Jmax25). The ratio between Jmax25 and Vcmax25 declines with warming. Accurate representation of leaf-level photosynthetic responses to temperature is essential for realistic projections of the terrestrial carbon cycle and its response to ongoing climate changes. However, many land-surface models incorporate thermal acclimation through empirical approaches and through assigning distinct but static parameter values to plant functional types (PFTs). Eco-evolutionary optimality approaches provide a simpler way of modelling photosynthesis without recourse to PFTs. Here we use the sub-daily P model, an eco-evolutionary optimality-based model of photosynthesis that explicitly separates the instantaneous and acclimated responses of photosynthetic parameters to temperature to investigate how optimal temperature changes with growth temperature, as represented by leaf or air temperature. We show that the simulated responses are consistent with observations from both controlled experiments and eddy-covariance flux tower data. We show that changes in Topt, and in the assimilation rate at Topt, are caused by changes in carboxylation capacity and electron transport rate that follow directly from the hypotheses underlying the model.
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Journal articleSilvar-Viladomiu P, Cavan EL, Martin AH, et al., 2026,
Estimating the contribution of the Irish Sea fish community to carbon sink potential
, ICES Journal of Marine Science, Vol: 83, ISSN: 1054-3139The marine biological carbon cycle plays a crucial role in the sinking and sequestration of atmospheric carbon and in regulating the global climate. Most existing research on biological carbon sequestration has focused on the role of oceanic (off-shelf) species and processes. We know little about how species living on continental shelves contribute to and influence carbon sinks due to the complex dynamics of biological and physical transport processes. However, continental shelves often have high levels of carbon productivity and a high potential for disturbance from human activities such as fishing, which strongly impact fish communities. Fish are important components of ecosystems that interact with the biological carbon cycle. Here, we used an Ecopath with Ecosim food web model of the Irish Sea coupled with biogeochemical equations to provide a novel quantitative assessment of the contribution of the fish community to the annual carbon reaching the continental-shelf seafloor over a four-decade simulation (1973–2016). Similar to the open ocean, faecal pellets dominated estimates of fish-mediated carbon flux in the Irish Sea. Our simulations imply that pelagic fish contribute more than half of the fish-mediated carbon, equivalent to approximately 2% of the plankton-mediated carbon deposited on the seafloor. Our results provide the first quantitative assessment and early insights into the relationship between fish species and the biological carbon sink in a shelf ecosystem.
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Journal articleGider Yaman G, Bozkurt O, Akgun E, et al., 2026,
Neonatal Intestinal Perforations Due to IL10RB Deficiency.
, Indian J Pediatr -
Journal articleMaia R, Barbosa M, Negreiros D, et al., 2026,
Satellite hindcasts of foliar traits reveal a subtle but consistent relaxation of conservativeness in a biodiverse mountain grassland over the last four decades
, Ecography, Vol: 2026, ISSN: 0906-7590Projected warming and drying raise concerns about the resilience of stress-adapted ecosystems, including the Brazilian Campo Rupestre, an exceptionally biodiverse mountaintop grassland mosaic on ancient, nutrient-poor substrates. Here, we combine field-based trait data and long-term remote sensing to assess the functional structure and temporal dynamics of these communities. Using foliar trait measurements from 247 vegetation plots across five contrasting habitats, we 1) quantify contemporary community-level functional structure, 2) evaluate how edaphic and climatic filters shape spatial variation in community-weighted foliar traits, and 3) reconstruct multi-decadal trait trajectories by hindcasting from long-term Landsat reflectance (1984–2022). Contemporary communities occupy a narrow and predominantly conservative region of the leaf-economic trait spectrum, yet habitats differ in their functional positions within CSR strategy space, indicating non-uniform trait coordination despite overall conservatism. Soil texture and acidity define the primary conservative–acquisitive axis of trait variation, while climatic water balance acts as a secondary modulator; together, these predictors explain 39% of the spatial variation in community-weighted traits. Contrary to expectations of increasing conservatism under progressive climatic stress, Landsat-based hindcasts reveal only modest temporal reorganisation. Specific leaf area and leaf area increase across habitats, while leaf dry matter content declines slightly, indicating a subtle relaxation of conservative trait expression. Temporal changes are small relative to the pronounced spatial differentiation, suggesting strong functional inertia in this OCBIL system. Overall, Campo Rupestre communities persist within a conservative functional domain while exhibiting fine-scale, habitat-dependent differentiation structured by enduring soil and water-balance gradients.
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Journal articleCretois B, Rosten CM, Wiel J, et al., 2026,
TABMON: Design and deployment of a transnational passive acoustic monitoring network for European birds
, Methods in Ecology and Evolution, Vol: 17, Pages: 1867-1879Ecological surveys are often fragmented, costly and limited in scale, leading to large and long-standing knowledge gaps which threaten our ability to properly safeguard biodiversity. Passive acoustic monitoring (PAM) has promised to deliver automated biodiversity monitoring, but networks are rarely deployed on scales that can offer truly novel insights due to scalability and standardization challenges around collecting, managing, analysing and sharing data. Here we present the Transnational Acoustic Biodiversity Monitoring Network (TABMON), a standardized deployment of 108 autonomous sensors across Norway, the Netherlands, France and Spain along a continental bird migration route. Audio is recorded continuously, uploaded in near real-time and processed through an automated analysis pipeline designed to support expert validation and the generation of datasets for deriving Essential Biodiversity Variables (EBVs). TABMON provides a methodological blueprint for transnational, networked PAM deployments and highlights both the opportunities and current limitations of near real-time acoustic biodiversity monitoring at continental scales.
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Journal articleMaretvadakethope S, Perez-Carrasco R, 2026,
Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
, Current Opinion in Systems Biology, Vol: 44Small gene regulatory networks (GRNs) are well-established biological modules that underpin cellular decisions and dynamical function. Their theoretical understanding has largely been shaped by the motif idea, which links simple network wiring patterns to behaviours. This approach has been extremely influential, providing a clear and widely used language for regulatory logic, facilitating the understanding of behaviours such as bistability, ultra-sensitivity, or oscillations. However, a growing body of theoretical and experimental work now challenges the idea that circuit behaviour is fully determined by topology alone, revealing that even very small GRNs can exhibit much richer dynamics once molecular implementation, stochasticity, and upstream modulation are taken into account. Recent advances show that the timing, precision, and reversibility of cell-fate decisions depend critically on signal history, noise structure, and molecular context, even in minimal circuits. Furthermore, there is growing evidence that small GRNs support a wide range of non-canonical dynamical behaviours including mushroom and isola bifurcations, hybrid oscillatory–switching regimes, and pronounced critical slowing down, substantially expanding their functional repertoire without increasing topological complexity. Crucially, these behaviours are highly sensitive to how regulation is implemented at the molecular level: distinct promoter architectures, regulatory logics, and stochastic mechanisms—often hidden by standard Hill-function descriptions—can qualitatively reshape circuit dynamics, requiring an explicit link between abstract network structure and specific biophysical processes. Together, these results expose fundamental limits to inferring function from topology alone or to reconstructing mechanisms from expression data. Rather than simplified motifs, Small GRNs still provide a uniquely powerful setting in which to explore these open questions in order to progress
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