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Journal articlePalmer J, Samuelson AE, Gill RJ, et al., 2024,
Foraging distance distributions reveal how honeybee waggle dance recruitment varies with landscape
, Communications Biology, Vol: 7, ISSN: 2399-3642Honeybee (Apis mellifera) colonies use a unique collective foraging system, the waggle dance, to communicate and process the location of resources. Here, we present a means to quantify the effect of recruitment on colony forager allocation across the landscape by simply observing the waggle dance on the dancefloor. We show first, through a theoretical model, that recruitment leaves a characteristic imprint on the distance distribution of foraging sites that a colony visits, which varies according to the proportion of trips driven by individual search. Next, we fit this model to the real-world empirical distance distribution of forage sites visited by 20 honeybee colonies in urban and rural landscapes across South East England, obtained via dance decoding. We show that there is considerable variation in the use of dancing information in colony foraging, particularly in agri-rural landscapes. In our dataset, reliance on dancing increases as arable land gives way to built-up areas, suggesting that dancing may have the greatest impact on colony foraging in the complex and heterogeneous landscapes of forage-rich urban areas. Our model provides a tool to assess the relevance of this extraordinary behaviour across modern anthropogenic landscape types.
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Journal articleJaramillo V, Hebron H, Wong S, et al., 2024,
Closed-loop auditory stimulation targeting alpha and theta oscillations during rapid eye movement sleep induces phase-dependent power and frequency changes
, SLEEP, Vol: 47, ISSN: 0161-8105 -
Journal articleDrobnič T, Cohen EJ, Calcraft T, et al., 2024,
Molecular model of a bacterial flagellar motor in situ reveals a "parts-list" of protein adaptations to increase torque.
, bioRxivOne hurdle to understanding how molecular machines work, and how they evolve, is our inability to see their structures in situ. Here we describe a minicell system that enables in situ cryogenic electron microscopy imaging and single particle analysis to investigate the structure of an iconic molecular machine, the bacterial flagellar motor, which spins a helical propeller for propulsion. We determine the structure of the high-torque Campylobacter jejuni motor in situ, including the subnanometre-resolution structure of the periplasmic scaffold, an adaptation essential to high torque. Our structure enables identification of new proteins, and interpretation with molecular models highlights origins of new components, reveals modifications of the conserved motor core, and explain how these structures both template a wider ring of motor proteins, and buttress the motor during swimming reversals. We also acquire insights into universal principles of flagellar torque generation. This approach is broadly applicable to other membrane-residing bacterial molecular machines complexes.
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Journal articleMatthews TJ, Triantis KA, Wayman JP, et al., 2024,
The global loss of avian functional and phylogenetic diversity from anthropogenic extinctions.
, Science, Vol: 386, Pages: 55-60Humans have been driving a global erosion of species richness for millennia, but the consequences of past extinctions for other dimensions of biodiversity-functional and phylogenetic diversity-are poorly understood. In this work, we show that, since the Late Pleistocene, the extinction of 610 bird species has caused a disproportionate loss of the global avian functional space along with ~3 billion years of unique evolutionary history. For island endemics, proportional losses have been even greater. Projected future extinctions of more than 1000 species over the next two centuries will incur further substantial reductions in functional and phylogenetic diversity. These results highlight the severe consequences of the ongoing biodiversity crisis and the urgent need to identify the ecological functions being lost through extinction.
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Journal articleBarnada SM, de Gracia AG, Morenilla-Palao C, et al., 2024,
ARID1A-BAF coordinates ZIC2 genomic occupancy for epithelial-to-mesenchymal transition in cranial neural crest specification
, AMERICAN JOURNAL OF HUMAN GENETICS, Vol: 111, ISSN: 0002-9297 -
Journal articleChristophides GK, 2024,
Essential vector-disease resource faces shutdown without funding
, NATURE, Vol: 634, Pages: 33-33, ISSN: 0028-0836 -
Journal articlePipatpadungsin N, Chao K, Rouse SL, 2024,
Coarse-Grained Simulations of Adeno-Associated Virus and Its Receptor Reveal Influences on Membrane Lipid Organization and Curvature
, JOURNAL OF PHYSICAL CHEMISTRY B, Vol: 128, Pages: 10139-10153, ISSN: 1520-6106 -
Journal articleSalis A, Badaire F, Coye C, et al., 2024,
Mechanisms of mobbing call recognition: exploring featural decoding in great tits
, Animal Behaviour, Vol: 216, Pages: 63-71, ISSN: 0003-3472Recent research on bird calls has unearthed a striking result: birds sometimes react to the calls of other species that are neither geographically nor phylogenetically close. One mechanism explaining this response may be the recognition of specific acoustic features, also present in their own vocalizations, rather than the recognition of complete notes, with the result that unfamiliar calls may be understood if they contain the critical feature. Parids and other passerines produce mobbing calls with similar properties that are responded to across species (i.e. noisy, large frequency range notes reaching low frequencies and with numerous harmonics) that are therefore good candidates for recognition based on features. In a playback experiment, we explored the featural interpretation hypothesis by testing the response of free-ranging great tits, Parus major, to artificial mobbing calls with varying acoustic properties. We first confirmed that they respond to artificial calls sharing all the targeted spectral properties (large frequency range, low frequency, noise and harmonics). In contrast, great tits did not respond to calls with the same rhythmicity but without the targeted features. We then tested whether great tits respond to calls that possess only one of the four above-mentioned properties. We show that great tits did not respond to any of the four treatments, and therefore no single specific spectral feature seems likely to explain great tits' response to unknown calls. We discuss alternative mechanisms for decoding novel calls, notably through a similarity threshold.
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Journal articleKomenda J, Sobotka R, Nixon PJ, 2024,
The biogenesis and maintenance of photosystem II: recent advances and current challenges
, The Plant Cell, Vol: 36, Pages: 3997-4013, ISSN: 1040-4651The growth of plants, algae and cyanobacteria relies on the catalytic activity of the oxygen-evolving photosystem two (PSII) complex which uses solar energy to extract electrons from water to feed into the photosynthetic electron transport chain. PSII is proving to be an excellent system to study how large multi-subunit membrane-protein complexes are assembled in the thylakoid membrane and subsequently repaired in response to photooxidative damage. Here we summarize recent developments in understanding the biogenesis of PSII, with an emphasis on recent insights obtained from biochemical and structural analysis of cyanobacterial PSII assembly/repair intermediates. We also discuss how chlorophyll synthesis is synchronized with protein synthesis and suggest a possible role for photosystem I in PSII assembly. Special attention is paid to unresolved and controversial issues that could be addressed in future research.
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Journal articleWong S, Brown AD, Abrahams AB, et al., 2024,
A Modified Cell-Penetrating Peptide Enhances Insulin and Oxytocin Delivery across an RPMI 2650 Nasal Epithelial Cell Barrier In Vitro
, PHARMACEUTICS, Vol: 16 -
Journal articleSanchez Garrido J, Naemi Baghshomali Y, Kaushal P, et al., 2024,
Impaired neutrophil migration underpins host susceptibility to infectious colitis
, Mucosal Immunology, Vol: 17, Pages: 939-957, ISSN: 1933-0219Citrobacter rodentium models infection with enteropathogenic Escherichia coli and ulcerative colitis (UC). While C57BL/6 (C57) mice recover, C3H/HeN (C3H) mice succumb to infection, partially due to increased colonic neutrophil elastase activity, also seen in UC patients; however, the underlying cause was unknown. Here, we found that bone marrow, blood, and colonic C57 neutrophils expressed (CD)11bHi and reached the infected colonic lumen, where they underwent productive NETosis. In contrast, while the number of C3H neutrophils increased in the bone marrow, blood, and colon, they remained CD11bLo and got trapped in the submucosa, away from C. rodentium, where they underwent harmful NETosis. CD11bLo neutrophils in C3H mice infected with CRi9, which triggers expression of neutrophil chemoattractants, reached the colonization site, resulting in host survival. UC patient neutrophils also displayed decreased levels of the activation/differentiation markers CD16/CXCR4. These results, suggesting that neutrophil malfunction contributes to exacerbated colitis, provide insight for future therapeutic prospects.
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Journal articleMills MB, Both S, Jotan P, et al., 2024,
From tree to plot: investigating stem CO<sub>2</sub> efflux and its drivers along a logging gradient in Sabah, Malaysian Borneo
, NEW PHYTOLOGIST, Vol: 244, Pages: 91-103, ISSN: 0028-646X -
Journal articleChen Z-W, Chintala SM, Bracamontes J, et al., 2024,
Three classes of propofol binding sites on GABAA receptors
, JOURNAL OF BIOLOGICAL CHEMISTRY, Vol: 300 -
Journal articleYuen ELH, Tumtas Y, King F, et al., 2024,
A pathogen effector co-opts a host RabGAP protein to remodel pathogen interface and subvert defense-related secretion
, Science Advances, Vol: 10, ISSN: 2375-2548Pathogens have evolved sophisticated mechanisms to manipulate host cell membrane dynamics, a crucial adaptation to survive in hostile environments shaped by innate immune responses. Plant-derived membrane interfaces, engulfing invasive hyphal projections of fungal and oomycete pathogens, are prominent junctures dictating infection outcomes. Understanding how pathogens transform these host-pathogen interfaces to their advantage remains a key biological question. Here, we identified a conserved effector, secreted by plant pathogenic oomycetes, that co-opts a host Rab GTPase-activating protein (RabGAP), TOPGAP, to remodel the host-pathogen interface. The effector, PiE354, hijacks TOPGAP as a susceptibility factor to usurp its GAP activity on Rab8a, a key Rab GTPase crucial for defense-related secretion. By hijacking TOPGAP, PiE354 purges Rab8a from the plasma membrane, diverting Rab8a-mediated immune trafficking away from the pathogen interface. This mechanism signifies an uncanny evolutionary adaptation of a pathogen effector in co-opting a host regulatory component to subvert defense-related secretion, thereby providing unprecedented mechanistic insights into the reprogramming of host membrane dynamics by pathogens.
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Journal articleChen W, Park Y-K, Studená L, et al., 2024,
Synthetic, marine, light-driven, autotroph-heterotroph co-culture system for sustainable β-caryophyllene production
, Bioresource Technology, Vol: 410, ISSN: 0960-8524Applying low-cost substrate is critical for sustainable bioproduction. Co-culture of phototrophic and heterotrophic microorganisms can be a promising solution as they can use CO2 and light as feedstock. This study aimed to create a light-driven consortium using a marine cyanobacterium Synechococcus sp. PCC 7002 and an industrial yeast Yarrowia lipolytica. First, the cyanobacterium was engineered to accumulate and secrete sucrose by regulating the expression of genes involved in sucrose biosynthesis and transport, resulting in 4.0 g/L of sucrose secretion. Then, Yarrowia lipolytica was engineered to efficiently use sucrose and produce β-caryophyllene that has various industrial applications. Then, co- and sequential-culture were optimized with different induction conditions and media compositions. A maximum β-caryophyllene yield of 14.1 mg/L was obtained from the co-culture. This study successfully established an artificial light-driven consortium based on a marine cyanobacterium and Y. lipolytica, and provides a foundation for sustainable bioproduction from CO2 and light through co-culture systems.
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Journal articleZhu Y, Gao Y, Wang W, et al., 2024,
Growth boundary of Fusarium graminearum spores as a function of temperature, pH, and H2S based on neural network
, FOOD BIOSCIENCE, Vol: 61, ISSN: 2212-4292 -
Journal articleJackson MC, O'Gorman EJ, Gallo B, et al., 2024,
Warming reduces trophic diversity in high-latitude food webs
, GLOBAL CHANGE BIOLOGY, Vol: 30, ISSN: 1354-1013 -
Journal articleLiu Y, Murphy K, Fernandes N, et al., 2024,
Transition metal homeostasis is key to metabolism and drug tolerance of Mycobacterium abscessus
, npj Antimicrobials and Resistance, Vol: 2, ISSN: 2731-8745Antimicrobial resistance (AMR) is one of the major challenges humans are facing this century. Understanding the mechanisms behind the rise of AMR is therefore crucial to tackle this global threat. The presence of transition metals is one of the growth-limiting factors for both environmental and pathogenic bacteria, and the mechanisms that bacteria use to adapt to and survive under transition metal toxicity resemble those correlated with the rise of AMR. A deeper understanding of transition metal toxicity and their potential as antimicrobial agents will expand our knowledge of AMR and assist the development of therapeutic strategies. In this study, we investigate the antimicrobial effect of two transition metal ions, namely cobalt (Co2+) and nickel (Ni2+), on the non-tuberculous environmental mycobacterium and the opportunistic human pathogen Mycobacterium abscessus. The minimum inhibitory concentrations of Co2+ and Ni2+ on M. abscessus were first quantified and their impact on the bacterial intracellular metallome was investigated. A multi-omics strategy that combines transcriptomics, bioenergetics, metabolomics and phenotypic assays was designed to further investigate the mechanisms behind the effects of transition metals. We show that transition metals induced growth defect and changes in transcriptome and carbon metabolism in M. abscessus, while the induction of the glyoxylate shunt and the WhiB7 regulon in response to metal stresses could be the key response that led to higher AMR levels. Meanwhile, transition metal treatment alters the bacterial response to clinically relevant antibiotics, and enhance the uptake of clarithromycin into bacterial cells, leading to increased efficacy. This work provides insights into the tolerance mechanisms of M. abscessus to transition metal toxicity and demonstrates the possibility of using transition metals to adjuvate the efficacy of currently using antimicrobials against M. abscessus infections.
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Journal articleColonna G, Feng S, Koh H, et al., 2024,
Outstanding Reviewers for <i>Molecular Omics</i> in 2023
, MOLECULAR OMICS, Vol: 20, Pages: 504-504 -
Journal articleHutchison CDM, Perrett S, van Thor JJ, 2024,
XFEL beamline optical instrumentation for ultrafast science
, The Journal of Physical Chemistry B, Vol: 128, Pages: 8855-8868, ISSN: 1520-6106Free electron lasers operating in the soft and hard X-ray regime provide capabilities for ultrafast science in many areas, including X-ray spectroscopy, diffractive imaging, solution and material scattering, and X-ray crystallography. Ultrafast time-resolved applications in the picosecond, femtosecond, and attosecond regimes are often possible using single-shot experimental configurations. Aside from X-ray pump and X-ray probe measurements, all other types of ultrafast experiments require the synchronized operation of pulsed laser excitation for resonant or nonresonant pumping. This Perspective focuses on the opportunities for the optical control of structural dynamics by applying techniques from nonlinear spectroscopy to ultrafast X-ray experiments. This typically requires the synthesis of two or more optical pulses with full control of pulse and interpulse parameters. To this end, full characterization of the femtosecond optical pulses is also highly desirable. It has recently been shown that two-color and two-pulse femtosecond excitation of fluorescent protein crystals allowed a Tannor-Rice coherent control experiment, performed under characterized conditions. Pulse shaping and the ability to synthesize multicolor and multipulse conditions are highly desirable and would enable XFEL facilities to offer capabilities for structural dynamics. This Perspective will give a summary of examples of the types of experiments that could be achieved, and it will additionally summarize the laser, pulse shaping, and characterization that would be recommended as standard equipment for time-resolved XFEL beamlines, with an emphasis on ultrafast time-resolved serial femtosecond crystallography.
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Journal articleCrowther TW, Rappuoli R, Corinaldesi C, et al., 2024,
Scientists' call to action: Microbes, planetary health, and the Sustainable Development Goals
, CELL, Vol: 187, Pages: 5195-5216, ISSN: 0092-8674 -
Journal articleIsalan M, Armstrong A, 2024,
Engineering bacterial theranostics: from logic gates to in vivo applications
, Frontiers in Bioengineering and Biotechnology, Vol: 12, ISSN: 2296-4185Over the past two decades, rapid advances in synthetic biology have enabled the design of increasingly intricate and biologically relevant systems with broad applications in healthcare. A growing area of interest is in designing bacteria that sense and respond to endogenous diseaseassociated signals, creating engineered theranostics that function as disease surveyors for human health. In particular, engineered cells hold potential in facilitating greatly enhanced temporal and spatial control over the release of a range of therapeutics. Such systems are particularly useful for targeting challenging, under-drugged disease targets in a more nuanced manner than is currently possible. This review provides an overview of the recent advances in the design, delivery, and dynamics of bacterial theranostics to enable safe, robust, and genetically tractable therapies to treat disease. It outlines the primary challenges in theranostic clinical translation, proposes strategies to overcome these issues, and explores promising future avenues for the field.
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Journal articleKientega M, Clarkson CS, Traoré N, et al., 2024,
Whole-genome sequencing of major malaria vectors reveals the evolution of new insecticide resistance variants in a longitudinal study in Burkina Faso
, Malaria Journal, Vol: 23, ISSN: 1475-2875BACKGROUND: Intensive deployment of insecticide based malaria vector control tools resulted in the rapid evolution of phenotypes resistant to these chemicals. Understanding this process at the genomic level is important for the deployment of successful vector control interventions. Therefore, longitudinal sampling followed by whole genome sequencing (WGS) is necessary to understand how these evolutionary processes evolve over time. This study investigated the change in genetic structure and the evolution of the insecticide resistance variants in natural populations of Anopheles gambiae over time and space from 2012 to 2017 in Burkina Faso. METHODS: New genomic data have been generated from An. gambiae mosquitoes collected from three villages in the western part of Burkina Faso between 2012 and 2017. The samples were whole-genome sequenced and the data used in the An. gambiae 1000 genomes (Ag1000G) project as part of the Vector Observatory. Genomic data were analysed using the analysis pipeline previously designed by the Ag1000G project. RESULTS: The results showed similar and consistent nucleotide diversity and negative Tajima's D between An. gambiae sensu stricto (s.s.) and Anopheles coluzzii. Principal component analysis (PCA) and the fixation index (FST) showed a clear genetic structure in the An. gambiae sensu lato (s.l.) species. Genome-wide FST and H12 scans identified genomic regions under divergent selection that may have implications in the adaptation to ecological changes. Novel voltage-gated sodium channel pyrethroid resistance target-site alleles (V402L, I1527T) were identified at increasing frequencies alongside the established alleles (Vgsc-L995F, Vgsc-L995S and N1570Y) within the An. gambiae s.l. POPULATIONS: Organophosphate metabolic resistance markers were also identified, at increasing frequencies, within the An. gambiae s.s. populations from 2012 to 2017, including the SNP Ace1-G280S and its associated duplication. Variants simultaneously identifi
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Journal articleMataranyika PN, Bez C, Venturi V, et al., 2024,
Rhizospheric, seed, and root endophytic-associated bacteria of drought-tolerant legumes grown in arid soils of Namibia
, Heliyon, Vol: 10, ISSN: 2405-8440Plant growth-promoting bacteria (PGPB) are of increased interest as they offer sustainable alternatives to the more common chemical fertilisers. Research, however, has increased into the use of PGPB as bioinoculants to improve yields. Legumes are known to interact with diazotroph PGPB which increase nutrient uptake, prevent pathogenic infections, and actively fix nitrogen. This study aimed to comprehensively describe PGPB associated with legumes grown in Namibia through analysis of the site-specific bacterial microbiomes. In the present study, we used the 16S rRNA sequencing approach to determine the structure of rhizosphere, root, and seed endosphere microbiomes of five drought-tolerant legume species: Macrotyloma uniflorum, Vigna radiata, Vigna aconitifolia, Vigna unguiculata and Lablab purpureus. Several important phyla were identified including Actinobacteriota, Bacteroidota, Firmicutes, Proteobacteria and Verrucomicrobiota. Overall, Proteobacteria was the most abundant phylum followed by Actinobacteria. The most important genera identified were Bacillus, Mesorhizobium, Pseudomonas, Bradyrhizobium and the Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium group. The relative abundance of these genera varied across sample types and legume species. This study identified important diazotrophs across all the legume species. Bacillus, an important PGPB, was found to be the most abundant genus among all the niches analysed and legume species, while Rhizobium spp. was particularly enriched in roots. This study ultimately provides previously undescribed information on legume-associated bacterial communities in Namibia.
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Journal articleLi J, Prentice IC, 2024,
Global patterns of plant functional traits and their relationships to climate
, Communications Biology, Vol: 7, ISSN: 2399-3642Plant functional traits (FTs) determine growth, reproduction and survival strategies of plants adapted to their growth environment. Exploring global geographic patterns of FTs, their covariation and their relationships to climate are necessary steps towards better-founded predictions of how global environmental change will affect ecosystem composition. We compile an extensive global dataset for 16 FTs and characterise trait-trait and trait-climate relationships separately within non-woody, woody deciduous and woody evergreen plant groups, using multivariate analysis and generalised additive models (GAMs). Among the six major FTs considered, two dominant trait dimensions—representing plant size and the leaf economics spectrum (LES) respectively—are identified within all three groups. Size traits (plant height, diaspore mass) however are generally higher in warmer climates, while LES traits (leaf mass and nitrogen per area) are higher in drier climates. Larger leaves are associated principally with warmer winters in woody evergreens, but with wetter climates in non-woody plants. GAM-simulated global patterns for all 16 FTs explain up to three-quarters of global trait variation. Global maps obtained by upscaling GAMs are broadly in agreement with iNaturalist citizen-science FT data. This analysis contributes to the foundations for global trait-based ecosystem modelling by demonstrating universal relationships between FTs and climate.
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Journal articleShrestha D, Bahasoan Y, Eggeling C, 2024,
Cellular Output and Physicochemical Properties of the Membrane-Derived Vesicles Depend on Chemical Stimulants
, ACS APPLIED MATERIALS & INTERFACES, Vol: 16, Pages: 48982-48992, ISSN: 1944-8244 -
Journal articleCavan EL, Mackay N, Hill SL, et al., 2024,
Antarctic krill sequester similar amounts of carbon to key coastal blue carbon habitats
, Nature Communications, Vol: 15, ISSN: 2041-1723The carbon sequestration potential of open-ocean pelagic ecosystems is vastly under-reported compared to coastal vegetation ‘blue carbon’ systems. Here we show that just a single pelagic harvested species, Antarctic krill, sequesters a similar amount of carbon through its sinking faecal pellets as marshes, mangroves and seagrass. Due to their massive population biomass, fast-sinking faecal pellets and the modest depths that pellets need to reach to achieve sequestration (mean is 381 m), Antarctic krill faecal pellets sequester 20 MtC per productive season (spring to early Autumn). This is equates USD$ 4 − 46 billion depending on the price of carbon, with krill pellet carbon stored for at least 100 years and with some reaching as far as the North Pacific. Antarctic krill are being impacted by rapid polar climate change and an expanding fishery, thus krill populations and their habitat warrant protection to preserve this valuable carbon sink.
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Journal articleHaas O, Keeping T, Gomez-Dans J, et al., 2024,
The global drivers of wildfire
, Frontiers in Environmental Science, Vol: 12, ISSN: 2296-665XChanges in wildfire regimes are of growing concern and raise issues about how well we can model risks in a changing climate. Process-based coupled fire-vegetation models, used to project future wildfire regimes, capture many aspects of wildfire regimes poorly. However, there is now a wealth of information from empirical studies on the climate, vegetation, topography and human activity controls on wildfire regimes. The measures used to quantify these controls vary among studies, but certain variables consistently emerge as the most important: gross primary production as a measure of fuel availability, vegetation cover as a measure of fuel continuity, and atmospheric humidity as a measure of fuel drying. Contrary to popular perception, ignitions are generally not a limiting factor for wildfires. In this review, we describe how empirical fire models implement wildfire processes, synthesise current understanding of the controls on wildfire extent and severity, and suggest ways in which fire modelling could be improved.• Empirical analyses of the controls on wildfires consistently identify vegetation properties associated with fuel availability and continuity and climate factors associated with fuel drying as the most important influences on wildfire extent and severity. • Ignitions, whether anthropogenic or natural, are generally not limiting.• Fire size, burnt area and fire intensity are influenced by different factors; current relationships between these aspects of wildfire could become decoupled in an altered climate. • Some hypotheses embedded in 'process-based' fire-vegetation models are inconsistent with empirical evidence, implying a need for a re-design.
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Journal articleWu G, Grassi P, Molina BG, et al., 2024,
Glycomics of cervicovaginal fluid from women at risk of preterm birth reveals immuno-regulatory epitopes that are hallmarks of cancer and viral glycosylation
, Scientific Reports, Vol: 14, ISSN: 2045-2322During pregnancy the immune system needs to maintain immune tolerance of the foetus while also responding to infection, which can cause premature activation of the inflammatory pathways leading to the onset of labour and preterm birth. The vaginal microbiome is an important modifier of preterm birth risk, with Lactobacillus dominance during pregnancy associated with term delivery while high microbial diversity is associated with an increased risk of preterm birth. Glycans on glycoproteins along the lower female reproductive tract are fundamental to microbiota-host interactions and the mediation of inflammatory responses. However, the specific glycan epitopes involved in these processes are not well understood. To address this, we conducted glycomic analyses of cervicovaginal fluid (CVF) from 36 pregnant women at high risk of preterm birth and 4 non-pregnant women. Our analysis of N- and O-glycans revealed a rich CVF glycome. While O-glycans were shown to be the main carriers of ABO blood group epitopes, the main features of N-glycans were the presence of abundant paucimannose and high mannose glycans, and a remarkable diversity of complex bi-, tri-, and tetra-antennary glycans decorated with fucose and sialic acid. We identified immuno-regulatory epitopes, such as Lewis antigens, and found that fucosylation was negatively correlated to pro-inflammatory factors, such as IL-1β, MMP-8, C3a and C5a, while glycans with only sialylated antennae were mainly positively correlated to those. Similarly, paucimannose glycans showed a positive correlation to pro-inflammatory factors. We revealed a high abundance of glycans which have previously been identified as hallmarks of cancer and viral glycosylation, such as Man8 and Man9 high mannose glycans. Although each pregnant woman had a unique glycomic profile, longitudinal studies showed that the main glycosylation features were consistent throughout pregnancy in women who delivered at term, whereas women who experienced ext
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Journal articleFallesen T, Amerteifio S, Pruessner G, et al., 2024,
Intermittent cell division dynamics in regenerating Arabidopsis roots reveals complex long-range interactions
, Quantitative Plant Biology, Vol: 5, ISSN: 2632-8828In this work, we present a quantitative comparison of the cell division dynamics between populations of intact and regenerating root tips in the plant model system Arabidopsis thaliana. To achieve the required temporal resolution and to sustain it for the duration of the regeneration process, we adopted a live imaging system based on light-sheet fluorescence microscopy, previously developed in the laboratory. We offer a straightforward quantitative analysis of the temporal and spatial patterns of cell division events showing a statistically significant difference in the frequency of mitotic events and spatial separation of mitotic event clusters between intact and regenerating roots.
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