Publications from our Researchers

Several of our current PhD candidates and fellow researchers at the Data Science Institute have published, or in the proccess of publishing, papers to present their research.  


BibTex format

author = {Ruijsink, B and Puyol-Antón, E and Oksuz, I and Sinclair, M and Bai, W and Schnabel, JA and Razavi, R and King, AP},
doi = {10.1016/j.jcmg.2019.05.030},
journal = {JACC: Cardiovascular Imaging},
pages = {684--695},
title = {Fully automated, quality-controlled cardiac analysis from CMR: Validation and large-scale application to characterize cardiac function},
url = {},
volume = {13},
year = {2020}

RIS format (EndNote, RefMan)

AB - OBJECTIVES: This study sought to develop a fully automated framework for cardiac function analysis from cardiac magnetic resonance (CMR), including comprehensive quality control (QC) algorithms to detect erroneous output. BACKGROUND: Analysis of cine CMR imaging using deep learning (DL) algorithms could automate ventricular function assessment. However, variable image quality, variability in phenotypes of disease, and unavoidable weaknesses in training of DL algorithms currently prevent their use in clinical practice. METHODS: The framework consists of a pre-analysis DL image QC, followed by a DL algorithm for biventricular segmentation in long-axis and short-axis views, myocardial feature-tracking (FT), and a post-analysis QC to detect erroneous results. The study validated the framework in healthy subjects and cardiac patients by comparison against manual analysis (n = 100) and evaluation of the QC steps' ability to detect erroneous results (n = 700). Next, this method was used to obtain reference values for cardiac function metrics from the UK Biobank. RESULTS: Automated analysis correlated highly with manual analysis for left and right ventricular volumes (all r > 0.95), strain (circumferential r = 0.89, longitudinal r > 0.89), and filling and ejection rates (all r ≥ 0.93). There was no significant bias for cardiac volumes and filling and ejection rates, except for right ventricular end-systolic volume (bias +1.80 ml; p = 0.01). The bias for FT strain was <1.3%. The sensitivity of detection of erroneous output was 95% for volume-derived parameters and 93% for FT strain. Finally, reference values were automatically derived from 2,029 CMR exams in healthy subjects. CONCLUSIONS: The study demonstrates a DL-based framework for automated, quality-controlled characterization of cardiac function from cine CMR, without the need for direct clinician oversight.
AU - Ruijsink,B
AU - Puyol-Antón,E
AU - Oksuz,I
AU - Sinclair,M
AU - Bai,W
AU - Schnabel,JA
AU - Razavi,R
AU - King,AP
DO - 10.1016/j.jcmg.2019.05.030
EP - 695
PY - 2020///
SN - 1876-7591
SP - 684
TI - Fully automated, quality-controlled cardiac analysis from CMR: Validation and large-scale application to characterize cardiac function
T2 - JACC: Cardiovascular Imaging
UR -
UR -
UR -
VL - 13
ER -